View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6154_high_4 (Length: 460)

Name: NF6154_high_4
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6154_high_4
NF6154_high_4
[»] chr3 (2 HSPs)
chr3 (13-443)||(50834472-50834914)
chr3 (13-443)||(50840939-50841381)
[»] chr8 (2 HSPs)
chr8 (13-165)||(11729632-11729784)
chr8 (13-165)||(23739944-23740096)


Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 443
Target Start/End: Complemental strand, 50834914 - 50834472
Alignment:
Q  13 aaaataatgtaacaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg 112  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50834914 aaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg 50834815  T
Q  113 caagaagtgacagagaaaagtaaaatgaacaaaattcacgactcaaactgattgttttaaattatccagaatacatttataactctgaaacagaat---g 209  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||   |    
T  50834814 caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatattg 50834715  T
Q  210 ggattgactaataa--------atagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtaca 301  Q
    ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50834714 ggattgactaataattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtaca 50834615  T
Q  302 ggagaatgtgcccatggaaagacgggattgatgatc-aaagcaaagctcaacattaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaat 400  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50834614 ggagaatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaat 50834515  T
Q  401 tacacacctcttgttcttacaaaccgagaaagcaaattcattc 443  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  50834514 tacacacctcttgttcttacaaaccgagaaagcaaattcattc 50834472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 443
Target Start/End: Original strand, 50840939 - 50841381
Alignment:
Q  13 aaaataatgtaacaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg 112  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50840939 aaaataatgtaacaacataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg 50841038  T
Q  113 caagaagtgacagagaaaagtaaaatgaacaaaattcacgactcaaactgattgttttaaattatccagaatacatttataactctgaaacagaat---g 209  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||   |    
T  50841039 caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgattatttcaaattatccagaatatatttataactctgaaacagaatattg 50841138  T
Q  210 ggattgactaataa--------atagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtaca 301  Q
    ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50841139 ggattgactaataattatgtaaatagaaattacatagacacactaaatatatggttatgggcttggagaattgatgccaagaatccatgtgaaaggtaca 50841238  T
Q  302 ggagaatgtgcccatggaaagacgggattgatgatc-aaagcaaagctcaacattaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaat 400  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50841239 ggagaatatgcccatggaaagacgggattgatgatcaaaagcaaagctcaacactaatgcaaagtcaataaaagacattcaaaactccaaatgaagaaat 50841338  T
Q  401 tacacacctcttgttcttacaaaccgagaaagcaaattcattc 443  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  50841339 tacacacctcttgttcttacaaaccgagaaagcaaattcattc 50841381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 11729784 - 11729632
Alignment:
Q  13 aaaataatgtaacaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11729784 aaaataatgtaacaaaataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg 11729685  T
Q  113 caagaagtgacagagaaaagtaaaatgaacaaaattcacgactcaaactgatt 165  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11729684 caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgatt 11729632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 13 - 165
Target Start/End: Complemental strand, 23740096 - 23739944
Alignment:
Q  13 aaaataatgtaacaaaataagaaagaaagatagaacaacctttgaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23740096 aaaataatgtaacaaaataagaaagaaagatagaacaaccttggaatttcaagaaaccaagagaccatgaaactttttaaaagaaaatagatggatagtg 23739997  T
Q  113 caagaagtgacagagaaaagtaaaatgaacaaaattcacgactcaaactgatt 165  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23739996 caagaagtgacagagaaaagtaacatgaacaaaattcacgactcaaactgatt 23739944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University