View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6154_low_1 (Length: 835)
Name: NF6154_low_1
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6154_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 439 - 823
Target Start/End: Original strand, 2035605 - 2035989
Alignment:
| Q |
439 |
ctaatcaaaatccttatacattgtaagataagatttaattgcttgtttgtttgttatttgtacctgtgtcttgtgatggaggtgcagatagcatgttctt |
538 |
Q |
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| T |
2035605 |
ctaattaaaatccttatacattgtaagataagatttaattgcttgtttgtttgttatttgtacctgtgtcttgtgatggaggtgcagatagcatgttctt |
2035704 |
T |
|
| Q |
539 |
ggcagcatcaaactcataaagaaataaaagcaaattgtaccaaatcatactttgcaagaaaacaatctgagctaacaagacaatagcttgatccttatac |
638 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2035705 |
ggcagcatcaaactcataaagaaataaaagcaaattgtaccaaatcatactttgcaagaaaacaatctgagctaacaagacaatagcttcatccttatac |
2035804 |
T |
|
| Q |
639 |
attgcttttaacaatggaattccaagaatcaaagtattaggaagtgttgataatgaaaaaccagttataatccatttcaaaccacctttaccactaatct |
738 |
Q |
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| T |
2035805 |
attgcttttaacaatggaattccaagaatcaaagtattaggaagtgttgataatgaaaaaccagttataatccatttcaaaccacctttaccactaatct |
2035904 |
T |
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| Q |
739 |
taataattgctgttaagagaacaaatgcaagaattttctgaatgaaatcagaaaacattagttttaggctcattttgtagatatt |
823 |
Q |
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| T |
2035905 |
taataattgctgttaagagaacaaatgcaagaagtttctgaatgaaatcagaaaacattagttttaggctcattttgtagatatt |
2035989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 449
Target Start/End: Original strand, 2034985 - 2035414
Alignment:
| Q |
20 |
gcagagacctctaaaacctttatattacgagtgcaattgcggttgcaaatcacaatttaaaactatgttaagaagatagaaatgataccatttccctttg |
119 |
Q |
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| T |
2034985 |
gcagagacctctaaaacctttatattacgagtataattgcacttgcaaaccacaatttaaaactatgttaagaagatagaaatgataccatttccctttg |
2035084 |
T |
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| Q |
120 |
caccactattaaaatccaaatattttaccatatagactaccatgaagcataaatgtgatgtaacatagatcaaggtgttaatttatagtaatttataact |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2035085 |
caccactattaaaatccaaatattttaccatatagactaccatgaagcataaatgtgatgtaacatagatcaaggtgttaatttatagtaattcataact |
2035184 |
T |
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| Q |
220 |
tgtatgttactaaaaaatgaggatataagttatcatnnnnnnntcagttgagcaataaatttagatgcaatgtgtatctaaatgaagtaaaaaagaaaat |
319 |
Q |
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| T |
2035185 |
tgtatgttactaaaaaacgaggatataagttatcataaaaaaatcatttgagcaataaatttagatgcaatgtgtatctaaatgaagtaaaaaagaaaat |
2035284 |
T |
|
| Q |
320 |
accacatggaaacaagagacagttaaaatgtaagttctggccctacattgattgtttagattactttatttagatgaaacaagattaatttaagcatatg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2035285 |
accacatggaaacaagagacagttaaaatgtaagttctggccctacattgattgtttagattactttatttagatgaaacaagattaatttaagcatatg |
2035384 |
T |
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| Q |
420 |
ttataatttcttacttgatctaatcaaaat |
449 |
Q |
| |
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|||||||||||||| |||| |||| ||||| |
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| T |
2035385 |
ttataatttcttacatgatttaataaaaat |
2035414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 7e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 540 - 745
Target Start/End: Original strand, 3217443 - 3217651
Alignment:
| Q |
540 |
gcagcatcaaactcataaagaaataaaagcaaattgtaccaaatcatactttgcaagaaaacaatctgagctaacaagacaat-agcttgatccttatac |
638 |
Q |
| |
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|||||||||| ||||| |||||| ||||||||||| ||||||||||||||||||||||||| |||||||| || | || ||| || || ||| |||||| |
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| T |
3217443 |
gcagcatcaagctcatgaagaaacaaaagcaaattataccaaatcatactttgcaagaaaataatctgaggtagta-gaaaatcagattcatctttatac |
3217541 |
T |
|
| Q |
639 |
attgcttttaacaatggaattccaagaatcaaagtattaggaagtgttgataatgaaaaaccagttataatccatttcaaaccacct---ttaccactaa |
735 |
Q |
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| T |
3217542 |
atagccttcatgagtggaattccaaggatcaaagtattaggaagtgttgataatgaaagaccagttataatccatttcaaacctcctctaatatcactaa |
3217641 |
T |
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| Q |
736 |
tcttaataat |
745 |
Q |
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|||||||||| |
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| T |
3217642 |
tcttaataat |
3217651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 646 - 697
Target Start/End: Original strand, 10838825 - 10838876
Alignment:
| Q |
646 |
ttaacaatggaattccaagaatcaaagtattaggaagtgttgataatgaaaa |
697 |
Q |
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||||||| |||||||| | || |||||| ||||||||||||||||||||||| |
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| T |
10838825 |
ttaacaaaggaattcccataaccaaagtgttaggaagtgttgataatgaaaa |
10838876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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