View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6154_low_16 (Length: 263)

Name: NF6154_low_16
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6154_low_16
NF6154_low_16
[»] chr3 (5 HSPs)
chr3 (1-246)||(50903773-50904018)
chr3 (1-99)||(50152288-50152386)
chr3 (1-35)||(38044585-38044619)
chr3 (1-35)||(48837985-48838019)
chr3 (1-34)||(147941-147974)
[»] chr7 (8 HSPs)
chr7 (1-37)||(32096802-32096838)
chr7 (1-35)||(32089329-32089363)
chr7 (1-35)||(32093086-32093120)
chr7 (1-35)||(41706693-41706727)
chr7 (1-35)||(41812159-41812193)
chr7 (1-33)||(39128556-39128588)
chr7 (1-33)||(39478457-39478489)
chr7 (1-35)||(32087974-32088008)
[»] chr8 (1 HSPs)
chr8 (1-35)||(21634870-21634904)
[»] chr6 (2 HSPs)
chr6 (1-35)||(26217298-26217332)
chr6 (3-33)||(7618996-7619026)
[»] chr1 (3 HSPs)
chr1 (1-35)||(31142012-31142046)
chr1 (3-33)||(34470026-34470056)
chr1 (1-33)||(6760094-6760126)
[»] chr5 (2 HSPs)
chr5 (4-33)||(8058720-8058749)
chr5 (1-33)||(17013884-17013916)
[»] chr2 (1 HSPs)
chr2 (1-33)||(20940535-20940567)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 50904018 - 50903773
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaaactaagaggtgatgtagtgtaatataaagcctaaaattttcacatatttagtcgatgtgggacta 100  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50904018 cgttccaattttatcggatgtccccgaagtgacaagctaagaggtgatgtagtgtaatataaagactaaaattttcacatatttagtcgatgtgggacta 50903919  T
Q  101 agaagaagccctgttgtttgtttacttctcaacatacattcacctgaacaaccaagcaacctacttccaactcagaagaagttcgtcgtccctctccttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50903918 agaagaagccctgttgtttgtttacttctcaacatacattcacctgaacaaccaagcaacctacttccaactcagaagaagttcgtcgtccctctccttc 50903819  T
Q  201 acactattcaaactctcaaacaatgccaatcatcatatcatagata 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  50903818 acactattcaaactctcaaacaatgccaatcatcatatcatagata 50903773  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 50152386 - 50152288
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaaactaagaggtgatgtagtgtaatataaagcctaaaattttcacatatttagtcgatgtgggact 99  Q
    ||||||||||||||| ||||||||| ||||||||| | | |||||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||    
T  50152386 cgttccaattttatcagatgtccccaaagggacaagcaaggaggtgttgtagcgtaatataaagactgaaattttcacatatttagtcgatgtgggact 50152288  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 38044585 - 38044619
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  38044585 cgttccaattttatcggatgtccccgaagggacaa 38044619  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 48838019 - 48837985
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  48838019 cgttccaattttatcggatgtccccgaagggacaa 48837985  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 147974 - 147941
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggaca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  147974 cgttccaattttatcggatgtccccgaagggaca 147941  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32096802 - 32096838
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaaac 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  32096802 cgttccaattttatcggatgtccccgaagggacaaac 32096838  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32089329 - 32089363
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  32089329 cgttccaattttatcggatgtccccgaagggacaa 32089363  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32093086 - 32093120
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  32093086 cgttccaattttatcggatgtccccgaagggacaa 32093120  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 41706693 - 41706727
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  41706693 cgttccaattttatcggatgtccccgaagggacaa 41706727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41812193 - 41812159
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  41812193 cgttccaattttatcggatgtccccgaagggacaa 41812159  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39128556 - 39128588
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggac 33  Q
    |||||||||||||||||||||||||||||||||    
T  39128556 cgttccaattttatcggatgtccccgaagggac 39128588  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39478489 - 39478457
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggac 33  Q
    |||||||||||||||||||||||||||||||||    
T  39478489 cgttccaattttatcggatgtccccgaagggac 39478457  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32087974 - 32088008
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaa 35  Q
    ||||||||||||||| |||||||||||||||||||    
T  32087974 cgttccaattttatcagatgtccccgaagggacaa 32088008  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21634870 - 21634904
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  21634870 cgttccaattttatcggatgtccccgaagggacaa 21634904  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 26217298 - 26217332
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  26217298 cgttccaattttatcggatgtccccgaagggacaa 26217332  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Original strand, 7618996 - 7619026
Alignment:
Q  3 ttccaattttatcggatgtccccgaagggac 33  Q
    |||||||||||||||||||||||||||||||    
T  7618996 ttccaattttatcggatgtccccgaagggac 7619026  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31142012 - 31142046
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggacaa 35  Q
    |||||||||||||||||||||||||||||||||||    
T  31142012 cgttccaattttatcggatgtccccgaagggacaa 31142046  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 33
Target Start/End: Complemental strand, 34470056 - 34470026
Alignment:
Q  3 ttccaattttatcggatgtccccgaagggac 33  Q
    |||||||||||||||||||||||||||||||    
T  34470056 ttccaattttatcggatgtccccgaagggac 34470026  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6760126 - 6760094
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggac 33  Q
    |||||||||||||||||||||||| ||||||||    
T  6760126 cgttccaattttatcggatgtccctgaagggac 6760094  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 8058749 - 8058720
Alignment:
Q  4 tccaattttatcggatgtccccgaagggac 33  Q
    ||||||||||||||||||||||||||||||    
T  8058749 tccaattttatcggatgtccccgaagggac 8058720  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17013916 - 17013884
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggac 33  Q
    |||||||||||||||||||||||| ||||||||    
T  17013916 cgttccaattttatcggatgtccctgaagggac 17013884  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 20940567 - 20940535
Alignment:
Q  1 cgttccaattttatcggatgtccccgaagggac 33  Q
    |||| ||||||||||||||||||||||||||||    
T  20940567 cgtttcaattttatcggatgtccccgaagggac 20940535  T

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