View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6154_low_17 (Length: 258)
Name: NF6154_low_17
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6154_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 34549430 - 34549665
Alignment:
| Q |
11 |
aatgatatgttgatgacaagatatgatgattaaagtccataaaactcagagttttggattcaatatttcatattgctgattctttctttgataatgatga |
110 |
Q |
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| T |
34549430 |
aatgatatgttgatgacaagatatgatgattaaagtccataaaactc-gagttttggattcaatatttcatattgctgattctttctttgataatgatga |
34549528 |
T |
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| Q |
111 |
ataacaagagaataaatagttaagctcaagctctaactgttatgccacatcagcagagaccctaactaataacttcgttacatcagttgagaaatttaac |
210 |
Q |
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| T |
34549529 |
ataacaagagaataaatagttaagctcaagctctaactgttatgccatatcaacagagaccctaactaataacttcgttacatcagttgagaaatttaac |
34549628 |
T |
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| Q |
211 |
cacattaactaacccttgtgatagctatagtgatgat |
247 |
Q |
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| T |
34549629 |
cacattaactaacccttgtgatagctataatgatgat |
34549665 |
T |
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