View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6154_low_19 (Length: 255)
Name: NF6154_low_19
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6154_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 9e-82; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 36 - 249
Target Start/End: Complemental strand, 5503035 - 5502822
Alignment:
| Q |
36 |
ggcatcagttcctttccaatcgaaacctgcgctttagacgtgctaagttaactgccataaaaaccagaagtttatctctcatgtcatatagaaaattgaa |
135 |
Q |
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| T |
5503035 |
ggcatcagttcctttccaatccaaacacacgctttagacgtgctaagttaactgccatcaaaatcagaagtttatctctcaggtcatatacaaaattgaa |
5502936 |
T |
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| Q |
136 |
atatgcatgtctccaagacccctttaatatcaagcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatctt |
235 |
Q |
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|||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
5502935 |
atatgcatgtctccaagacctctttaacaccaagcttccacacacaatccagaagccagtaatatacccgacaactatgcttgtgtataatcccaatctt |
5502836 |
T |
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| Q |
236 |
tcattgtcgtcatc |
249 |
Q |
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|||||||||||||| |
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| T |
5502835 |
tcattgtcgtcatc |
5502822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 67 - 255
Target Start/End: Complemental strand, 5497960 - 5497772
Alignment:
| Q |
67 |
ctttagacgtgctaagttaactgccataaaaaccagaagtttatctctcatgtcatatagaaaattgaaatatgcatgtctccaagacccctttaatatc |
166 |
Q |
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||||| ||||||||||||||| || || |||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||| |||||| ||| |
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| T |
5497960 |
ctttatacgtgctaagttaaccgcaatcaaaaccagaagtttatctttcatgtcatatacagaattgaaatatgcatgtctccaagacctctttaacatc |
5497861 |
T |
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| Q |
167 |
aagcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatctttcattgtcgtcatctccatc |
255 |
Q |
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| T |
5497860 |
aagcttccacacacaatccagaagccagtgatatacccaactgctatgcttgcatataatccccatctttcattgttgtcatctccatc |
5497772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 5469457 - 5469239
Alignment:
| Q |
37 |
gcatcagttcctttccaatcgaaacctgcgctttagacgtgctaagttaactgccataaaaaccagaagtttatctctcatgtcatatagaaaattgaaa |
136 |
Q |
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| T |
5469457 |
gcatcagttcctttccgatccaaacctgcgctttagatgcattaaattaaccgccatgaaaaccagaactttatctcttgtgtcatacatgaaattgaaa |
5469358 |
T |
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| Q |
137 |
tatgcatgtctccaagacccctttaatatcaagcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatcttt |
236 |
Q |
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| T |
5469357 |
tacgcatgtctccaagacctctttaacatcaagcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatcttt |
5469258 |
T |
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| Q |
237 |
cattgtcgtcatctccatc |
255 |
Q |
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|| ||| ||||||| |||| |
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| T |
5469257 |
cactgttgtcatcttcatc |
5469239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 42 - 238
Target Start/End: Complemental strand, 5492215 - 5492019
Alignment:
| Q |
42 |
agttcctttccaatcgaaacctgcgctttagacgtgctaagttaactgccataaaaaccagaagtttatctctcatgtcatatagaaaattgaaatatgc |
141 |
Q |
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|||| |||||||||| |||| ||||||||||||| | ||| |||| |||||| |||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
5492215 |
agttgctttccaatccaaacttgcgctttagacgcggtaaattaattgccatcaaaaccagaagtttatctcttgtgtcatatacaaaattgaaatatgc |
5492116 |
T |
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| Q |
142 |
atgtctccaagacccctttaatatcaagcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatctttca |
238 |
Q |
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| T |
5492115 |
atgtctccaagacctctttagcattaagcttccacacacaatccagaagccggtaatatacccgactgctatgcttgcatataatccaaatctttca |
5492019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 101 - 255
Target Start/End: Complemental strand, 5487153 - 5486999
Alignment:
| Q |
101 |
agaagtttatctctcatgtcatatagaaaattgaaatatgcatgtctccaagacccctttaatatcaagcttccacacacaatccagaagccagtaatat |
200 |
Q |
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||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||| ||||| |||| |
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| T |
5487153 |
agaagtttatctctcatgtcatacaaaaaattgaaatatgcatgtctccaagacctctttaacaccaagcttccacacacaatccagaaaccagttatat |
5487054 |
T |
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| Q |
201 |
acccgactgctatgcttgcatataatcccaatctttcattgtcgtcatctccatc |
255 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
5487053 |
acccgatagctatgcttgcatacaatcccaatctttcattgtcatcatctccatc |
5486999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 5479110 - 5478912
Alignment:
| Q |
40 |
tcagttcctttccaatcgaaacctgcgctttagacgtgctaagttaactgccataaaaaccagaagtttatctctcatgtcatatagaaaattgaaatat |
139 |
Q |
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||||||||||||||||| |||||| ||||||| ||| || || ||||| |||| || |||| |||||||||||| | ||||||| ||||||||||||| |
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| T |
5479110 |
tcagttcctttccaatccaaacctacgctttacacgcgccaaattaaccaccatcaagaccataagtttatctctggtttcatatacaaaattgaaatat |
5479011 |
T |
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| Q |
140 |
gcatgtctccaagacccctttaatatcaagcttccacacacaatccagaagccagtaatatacccgactgctatgcttgcatataatcccaatctttca |
238 |
Q |
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|||||||||||||||| |||||| |||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||||| |||||| |
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| T |
5479010 |
gcatgtctccaagacctctttaacatcatgcttccacacacaatccaaaagccagtgatatacccgacatctatgcttgcatataaccccaacctttca |
5478912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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