View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6154_low_20 (Length: 251)
Name: NF6154_low_20
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6154_low_20 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 49272090 - 49271853
Alignment:
| Q |
14 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacatac |
113 |
Q |
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| T |
49272090 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacacac |
49271991 |
T |
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| Q |
114 |
aagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctc |
213 |
Q |
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| T |
49271990 |
aagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctc |
49271891 |
T |
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| Q |
214 |
actgacctcaccattgagattcctattctgggtagtcc |
251 |
Q |
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| T |
49271890 |
actgacctcaccattgagattcctattctgggtagtcc |
49271853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 49278013 - 49277776
Alignment:
| Q |
14 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggccgacaatggaggcattacattaggacatac |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |
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| T |
49278013 |
aggcagtagtagacaaacaaggtaaccctcttaaaccaggtgaaggttactacgtatttccactttgggctgacaatggaggcataacattaggacaaac |
49277914 |
T |
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| Q |
114 |
aagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactctc |
213 |
Q |
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| T |
49277913 |
aagaaacaaaacatgccctcttgatgttatccgtaaccctgaagccattggctcgccagtttatttctatgaatatgaacatgattacattccaactctc |
49277814 |
T |
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| Q |
214 |
actgacctcaccattgagattcctattctgggtagtcc |
251 |
Q |
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| T |
49277813 |
actgatctcaccgttgagattccaatattgggtagtcc |
49277776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 112 - 211
Target Start/End: Complemental strand, 49269544 - 49269445
Alignment:
| Q |
112 |
acaagaaacaaaacatgccctcttgatgtaatccgtaaccctgatgcaatcggcacaccggtgtatttctctgcatcaggtcttgattacattccaactc |
211 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||| | | | ||||| | || ||||| ||||||||| ||||| || | |||||||||||| |
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| T |
49269544 |
acaagaaacaaaacatgtcctcttgatgtaattcgtaaccctaaagaactcggctcgccagtgtacttctctgcaccaggttttaaacacattccaactc |
49269445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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