View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6154_low_22 (Length: 248)

Name: NF6154_low_22
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6154_low_22
NF6154_low_22
[»] chr1 (13 HSPs)
chr1 (12-230)||(3300922-3301139)
chr1 (30-227)||(43045203-43045400)
chr1 (30-227)||(43045656-43045853)
chr1 (30-227)||(43066554-43066751)
chr1 (30-227)||(43084084-43084281)
chr1 (30-230)||(45993368-45993568)
chr1 (30-230)||(45983588-45983782)
chr1 (30-230)||(38137736-38137936)
chr1 (36-230)||(7888655-7888849)
chr1 (64-230)||(7890920-7891086)
chr1 (30-230)||(40034576-40034768)
chr1 (148-230)||(43076664-43076746)
chr1 (91-230)||(51291886-51292025)
[»] chr4 (1 HSPs)
chr4 (26-230)||(4231672-4231876)
[»] chr5 (1 HSPs)
chr5 (31-230)||(16349349-16349548)
[»] chr6 (2 HSPs)
chr6 (33-230)||(7519595-7519792)
chr6 (33-230)||(7528966-7529163)
[»] chr2 (4 HSPs)
chr2 (30-230)||(34691036-34691236)
chr2 (30-230)||(34713448-34713648)
chr2 (30-230)||(33861045-33861245)
chr2 (31-230)||(16232380-16232583)
[»] chr8 (5 HSPs)
chr8 (99-230)||(1846670-1846801)
chr8 (29-230)||(4297684-4297882)
chr8 (157-230)||(4620026-4620099)
chr8 (30-143)||(4787429-4787536)
chr8 (30-96)||(4619893-4619959)


Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 3300922 - 3301139
Alignment:
Q  12 caaagggctaaaacgttcaaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcc 111  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3300922 caaagggctaaaacgttcaaataccttgttgcagcaa-aaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcc 3301020  T
Q  112 tttgaaataccggcttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccc 211  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3301021 tttgatataccggcttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccc 3301120  T
Q  212 tgtgtccgggggcatcaat 230  Q
    |||||||||||||||||||    
T  3301121 tgtgtccgggggcatcaat 3301139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 43045203 - 43045400
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||    
T  43045203 aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttca 43045302  T
Q  130 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatc 227  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  43045303 aaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatc 43045400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 43045656 - 43045853
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||    
T  43045656 aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttca 43045755  T
Q  130 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatc 227  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  43045756 aaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatc 43045853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 227
Target Start/End: Complemental strand, 43066751 - 43066554
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||    
T  43066751 aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttca 43066652  T
Q  130 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatc 227  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  43066651 aaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatc 43066554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 43084084 - 43084281
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    ||||||||||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||||||||    
T  43084084 aaataccttgttgcaacagcagatcatttgcttcacaccaagagtgaaagcaaggagagcatgttcacgggtctgaccatccttagaaataccggcttca 43084183  T
Q  130 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatc 227  Q
    |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  43084184 aaaccaccagtagtggaatcaatgatgagaacggcacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatc 43084281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 45993568 - 45993368
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||||||||||||    
T  45993568 aaataccttgttgcagcaacagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgagtctgaccatcctttgaaataccggcttca 45993469  T
Q  130 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaa 229  Q
    |||||||  ||||||||||||||||| ||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||||| ||||||||    
T  45993468 aaaccacgagtagtggaatcaatgatgagaacagcacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggaggcatcaa 45993369  T
Q  230 t 230  Q
    |    
T  45993368 t 45993368  T

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Target: chr1; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 45983782 - 45983588
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    |||||||||||||||||| || |||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||| |      ||||||||||||    
T  45983782 aaataccttgttgcagcagcagatcatttgattcacaccaagagtgaaggcaagaagagcatgttcacgggtctgaccattc------ataccggcttca 45983689  T
Q  130 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaa 229  Q
    |||||||| ||||||||||||||||  ||||||||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||    
T  45983688 aaaccaccagtagtggaatcaatgacgagaacagcacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaa 45983589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 38137936 - 38137736
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    |||||||||||||||||| || ||||||||   ||||||||||  ||| ||||||||||| ||||||  |||||| || ||||  |||  ||| ||||||    
T  38137936 aaataccttgttgcagcagcagatcatttggcgcacaccaagaacgaatgcaagaagagcatgttcagaggtctgaccttcctgagaataaccagcttca 38137837  T
Q  130 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaa 229  Q
    |||| ||| || |||||||||||||  ||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||    
T  38137836 aaactaccagttgtggaatcaatgacgagaacagcacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccctgtgtccgggggcatcaa 38137737  T
Q  230 t 230  Q
    |    
T  38137736 t 38137736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 36 - 230
Target Start/End: Complemental strand, 7888849 - 7888655
Alignment:
Q  36 cttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaacca 135  Q
    |||||||||||| || |||||||  |  ||||| |||| ||| |||||  || | ||||||  |||||| ||||||||  ||| ||||||||||||||||    
T  7888849 cttgttgcagcagcagatcattttttaaacaccgagagcgaaggcaagttgaacatgttcagtggtctgaccatccttacaaaaaccggcttcaaaacca 7888750  T
Q  136 ccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaat 230  Q
    || || |||||||||||||| |||||||||||||||||||  || |  || || ||||||||||| |||||||||||||||||||||||||||||    
T  7888749 ccagttgtggaatcaatgatgagaacagcacaatcagcttcagacgccccggtgatcatgttcttgatgaaatccctgtgtccgggggcatcaat 7888655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 7891086 - 7890920
Alignment:
Q  64 acaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaaccaccggtagtggaatcaatgatcagaacag 163  Q
    |||||||||| ||| |||||  || | ||||||  |||||| |||| |||  ||| ||| || |||||||||||    || ||||||||||| |||||||    
T  7891086 acaccaagagcgaatgcaagttgaacatgttcagtggtctgaccattcttacaaaaaccagcgtcaaaaccaccaagtgtagaatcaatgataagaacag 7890987  T
Q  164 cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaat 230  Q
    |||| ||||||| ||| | |||||| ||||||||||||||||||||||||||||| |||||||||||    
T  7890986 cacagtcagcttcggacgctccagtgatcatgttcttaatgaaatccctgtgtccaggggcatcaat 7890920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 40034768 - 40034576
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    |||||||||||||||||| || |||||||| ||||||||||||||  | ||||||||||| ||||||  |||||| |||    |||  ||||| |  |||    
T  40034768 aaataccttgttgcagcagcagatcatttgattcacaccaagagtataggcaagaagagcatgttcagtggtctgacca----ttg--ataccagtctca 40034675  T
Q  130 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaa 229  Q
    |||| ||| ||  ||||||||||||| ||||||||||| |||||| |||| || || || | ||||||||| |||||||  |||||||||||||| ||||    
T  40034674 aaactaccagttctggaatcaatgatgagaacagcacagtcagctagggacgtgccggttaacatgttcttgatgaaat--ctgtgtccgggggcgtcaa 40034577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 43076746 - 43076664
Alignment:
Q  148 tcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaat 230  Q
    |||| ||| |||| |||||||||||||||||| || ||||| ||||||||||||||||||| | ||||||| ||| |||||||    
T  43076746 tcaaggataagaagagcacaatcagcttgggacgtcccagtgatcatgttcttaatgaaattcttgtgtcccgggacatcaat 43076664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 51291886 - 51292025
Alignment:
Q  91 tgttcacgggtctgcccatcctttgaaataccggcttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaa 190  Q
    ||||||| |||||| |||||||| |||  ||| |||||||| || || || |||||||||| ||| |||| | |||| ||||||||| | |  || |  |    
T  51291886 tgttcaccggtctgaccatccttagaataaccagcttcaaacccgccagttgtggaatcaaggatgagaataacacagtcagcttggaacggcccggcga 51291985  T
Q  191 tcatgttcttaatgaaatccctgtgtccgggggcatcaat 230  Q
    |||||||||||||||||| ||  |||||||||||||||||    
T  51291986 tcatgttcttaatgaaattcccatgtccgggggcatcaat 51292025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 26 - 230
Target Start/End: Original strand, 4231672 - 4231876
Alignment:
Q  26 gttcaaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggc 125  Q
    |||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||| |||||||| ||||| |||||||| |||||||| ||    
T  4231672 gttcaaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaagcaaggagagcatgttcacgagtctgaccatccttggaaataccagc 4231771  T
Q  126 ttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggca 225  Q
    |||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  4231772 ttcaaaaccaccagtggtggaatcaatgatgagaacagcacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggca 4231871  T
Q  226 tcaat 230  Q
    |||||    
T  4231872 tcaat 4231876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 31 - 230
Target Start/End: Original strand, 16349349 - 16349548
Alignment:
Q  31 aataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaa 130  Q
    ||||||||||||||||| || ||||||||||| |||||||||| | ||||| | ||||| ||||||||| |||| ||||  || |||||||||||| |||    
T  16349349 aataccttgttgcagcagcagatcatttgcttgacaccaagagagtaagcatggagagcatgttcacggatctgaccattattggaaataccggctccaa 16349448  T
Q  131 aaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaat 230  Q
    ||||| | | ||||||||||| ||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16349449 aaccagcaggagtggaatcaacgataagaagagcacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaat 16349548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 7519792 - 7519595
Alignment:
Q  33 taccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaa 132  Q
    ||||||||| || ||||| ||||| |||||||| |||||||| || ||||||||||| || ||||||||||| |||||||| || ||||| |||||||||    
T  7519792 taccttgttacaacaacagatcatctgcttcactccaagagtaaatgcaagaagagcatgctcacgggtctgtccatccttagagataccagcttcaaaa 7519693  T
Q  133 ccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaat 230  Q
    ||||| || ||||| |||||||| || |||||||||||||| ||||| |||||||||||||||||||| |||||||| |  |||||||| ||||||||    
T  7519692 ccaccagtggtggagtcaatgataaggacagcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaat 7519595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 7529163 - 7528966
Alignment:
Q  33 taccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaaaa 132  Q
    ||||||||| || ||||| ||||| |||||||| |||||||| || |||||||||||||| ||||||||||| |||||||| || ||||| |||||||||    
T  7529163 taccttgttacaacaacagatcatctgcttcactccaagagtaaatgcaagaagagcgtgctcacgggtctgtccatccttagagataccagcttcaaaa 7529064  T
Q  133 ccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaat 230  Q
    ||||| || ||||| |||||||| || || ||||||||||| ||||| |||||||||||||||||||| |||||||| |  |||||||| ||||||||    
T  7529063 ccaccagtggtggagtcaatgataagcacggcacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaat 7528966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 34691036 - 34691236
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||| ||||| | |||||| |||| ||| ||   ||| |||       
T  34691036 aaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgc 34691135  T
Q  130 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaa 229  Q
    ||||| |  ||||| ||||||||||  ||||||||||| ||||||||||| || || || |||||||||||||||||||||||||||||||| |||||||    
T  34691136 aaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaa 34691235  T
Q  230 t 230  Q
    |    
T  34691236 t 34691236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 34713448 - 34713648
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    |||||||||||||||||| || ||||||||| |||||||||||||||| ||||||||||| ||||| | |||||| |||| ||| ||   ||| |||       
T  34713448 aaataccttgttgcagcagcagatcatttgcctcacaccaagagtgaaggcaagaagagcatgttcccaggtctgaccattcttagaccaaccagctcgc 34713547  T
Q  130 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaa 229  Q
    ||||| |  ||||| ||||||||||  ||||||||||| ||||||||||| || || || |||||||||||||||||||||||||||||||| |||||||    
T  34713548 aaacctctagtagtcgaatcaatgacgagaacagcacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaa 34713647  T
Q  230 t 230  Q
    |    
T  34713648 t 34713648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 33861045 - 33861245
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    |||||||||||||  ||| || ||||||||   ||||||||||||| | || ||||| || |||||||||||||| |||| ||| |||| |||  |||||    
T  33861045 aaataccttgttgatgcagcagatcatttgaggcacaccaagagtgcaggcgagaagggcatgttcacgggtctgaccatgcttagaaaaaccaacttca 33861144  T
Q  130 aaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaa 229  Q
    |||||||| | || |||||||| ||| |||| ||| |||||||| | |||||| ||| ||||||||||||||||  ||||||||||||| ||||||||||    
T  33861145 aaaccaccaggagaggaatcaacgataagaagagcgcaatcagcataggatgtcccattaatcatgttcttaatataatccctgtgtccaggggcatcaa 33861244  T
Q  230 t 230  Q
    |    
T  33861245 t 33861245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 31 - 230
Target Start/End: Original strand, 16232380 - 16232583
Alignment:
Q  31 aataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttcaa 130  Q
    ||||||||||||||||| || ||||||||| |||||||||||||| | ||||| ||||| ||||| | |||||| |||||||| ||   ||| ||||  |    
T  16232380 aataccttgttgcagcagcagatcatttgcctcacaccaagagtgtacgcaagtagagcatgttcccaggtctgaccatccttagaccaaccagcttgca 16232479  T
Q  131 aaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttc----ttaatgaaatccctgtgtccgggggcat 226  Q
    ||||    ||||||||||  ||||  ||||||||||| ||||||| ||| || ||  | |||||||||    ||||||||||||||||||||||||||||    
T  16232480 aaccgagagtagtggaattgatgactagaacagcacagtcagcttcggaggtcccgatgatcatgttcttaattaatgaaatccctgtgtccgggggcat 16232579  T
Q  227 caat 230  Q
    ||||    
T  16232580 caat 16232583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 230
Target Start/End: Original strand, 1846670 - 1846801
Alignment:
Q  99 ggtctgcccatcctttgaaataccggcttcaaaaccaccggtagtggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttc 198  Q
    |||||| |||| |||  ||| ||| |||||||||||||| |  || || |||||||| ||||| ||||| ||||||| ||||| ||| || |||||||||    
T  1846670 ggtctgaccattcttacaaaaaccagcttcaaaaccaccaggtgtagagtcaatgataagaacggcacagtcagcttcggatgctccggtgatcatgttc 1846769  T
Q  199 ttaatgaaatccctgtgtccgggggcatcaat 230  Q
    ||||||||||||||||||||||||||||||||    
T  1846770 ttaatgaaatccctgtgtccgggggcatcaat 1846801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 230
Target Start/End: Original strand, 4297684 - 4297882
Alignment:
Q  29 caaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttc 128  Q
    ||||||||||||||||||| || || ||||| ||| |||||||| |||| ||||||||||| ||||||  |||||| |||  |      |||||||||||    
T  4297684 caaataccttgttgcagcagcagataatttgattcgcaccaagattgaaggcaagaagagcatgttcaaaggtctgaccaatc------ataccggcttc 4297777  T
Q  129 aaaaccaccggtag---tggaatcaatgatcagaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggca 225  Q
    ||||||||| ||||   ||||||||||||  |||||| |||| | |||| |||| | ||||||  |||||||||||||| | ||||| ||||||||||||    
T  4297778 aaaaccaccagtagtagtggaatcaatgacgagaacatcacagttagctagggacgctccagtggtcatgttcttaatgcattccctatgtccgggggca 4297877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 230
Target Start/End: Original strand, 4620026 - 4620099
Alignment:
Q  157 agaacagcacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaat 230  Q
    ||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||    
T  4620026 agaacagcacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgtccgggggcatcaat 4620099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 143
Target Start/End: Complemental strand, 4787536 - 4787429
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttcacgggtctgcccatcctttgaaataccggcttca 129  Q
    |||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||| |||||| ||||||| |||| |      ||||||||||||    
T  4787536 aaataccttgttgcagcagcagatcatttgcttcacaccaacagtgaaggcaagaagagcatgttcaagggtctgaccattc------ataccggcttca 4787443  T
Q  130 aaaccaccggtagt 143  Q
    |||||||| |||||    
T  4787442 aaaccaccagtagt 4787429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 4619893 - 4619959
Alignment:
Q  30 aaataccttgttgcagcaacaaatcatttgcttcacaccaagagtgaaagcaagaagagcgtgttca 96  Q
    ||||||||||||| |||| || |||||||||||||||||||| || |||||||| | ||| ||||||    
T  4619893 aaataccttgttgtagcagcagatcatttgcttcacaccaagggttaaagcaaggacagcatgttca 4619959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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