View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6154_low_3 (Length: 522)
Name: NF6154_low_3
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6154_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 189 - 517
Target Start/End: Original strand, 4113104 - 4113422
Alignment:
| Q |
189 |
aattgtagatgttttcagattatacttggatgatttttgacatgaaaaatctttagatccaaaagttactaagtgtatcaatattttccaattttttctt |
288 |
Q |
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| T |
4113104 |
aattgtagatgttttcagattatacttggatga-------catgaaaaatctttagatccaaaagttactaagtgtatcaaaattttccaattttttct- |
4113195 |
T |
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| Q |
289 |
cttgttcttatatgtattttccttgcacaggttgaatcaattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgt |
388 |
Q |
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| T |
4113196 |
--tgttcttatatgtattttccttgcacaggttgaatcaattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgt |
4113293 |
T |
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| Q |
389 |
atatttcctccactaacattggtaatatgaaaatcaaatgaatgaggtttaacagaacatttgtttttgttggttgtaggtgtgtggcactttgatcaga |
488 |
Q |
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| T |
4113294 |
atatttcctccactaccattggtaatatgaaaatcaaatgaatgaggtttaacagaacatttgtttttgttggttgtaggtgtgtggcactttgatcaga |
4113393 |
T |
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| Q |
489 |
ctcttctccattgattaagatgatgatgt |
517 |
Q |
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| T |
4113394 |
ctcttctccattgattaagatgatgatgt |
4113422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 19 - 165
Target Start/End: Original strand, 4112732 - 4112878
Alignment:
| Q |
19 |
atcgtaacaatgatcctcaattggcagacttcatcgagagcgagtttttggtagagcaggtaacacttaccttaagttgtcaagttgaaacttgaaatca |
118 |
Q |
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| T |
4112732 |
atcgtaacaatgatcctcaattggcagacttcatcgagagcgagtttttggtagagcaggtaacacttaccttaagttgtcaagttgaaacttgaaatca |
4112831 |
T |
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| Q |
119 |
tttttctgtatacttggagtagaagaaatactttgtttgtatccatg |
165 |
Q |
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| T |
4112832 |
tttttctgtatacttggagcagaagaaatactttgtttgtatccatg |
4112878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 25792566 - 25792490
Alignment:
| Q |
316 |
caggttgaatcaattaagaagatatcagagtatgtgactcaactgagattagttggaaagggtcacggtatgtatat |
392 |
Q |
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| T |
25792566 |
caggttgaatcaattaagaagatatcagagtatgtgtctcaattgagaagggttggaaagggtcatggtatgtatat |
25792490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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