View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6154_low_5 (Length: 452)
Name: NF6154_low_5
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6154_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 71 - 438
Target Start/End: Original strand, 46036092 - 46036461
Alignment:
| Q |
71 |
aatacataatacaattgagacaacaattttatgctggaattctggaagaaaagaaaaatccctatcataaattaaaccaaataggctcttatcagtgagt |
170 |
Q |
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| T |
46036092 |
aatacataatacaattgagacaacaattttatgctggaattctgaaagaaaagaaaaatccctatcataaattaaaccaaataggctcttatcaatgagt |
46036191 |
T |
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| Q |
171 |
atttttaggcataaatgaaaattcaaatattcatccatccaatgttcttgttgcgactgctttgtcctatgtcagtccttgtatctgttgcttgtctttt |
270 |
Q |
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| T |
46036192 |
atttttaggcataaatgaaaattcaaatattcatccatccaatgttcttgttgcgactgctttgtcctatgtcagtccttatatctgttgcttgtctttt |
46036291 |
T |
|
| Q |
271 |
tgaagcatcttgtaggtgcagaaactgtctgtaaaataatacacataatagaattacaccgatatataa--taagaacttattgtattgtcgcataagtc |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46036292 |
tgaagcatcttgtaggtgcagaaactgtctgtaaaataatacacataatacaattacaccgatatataatgtaagaacttattgtattgtcgcataagtc |
46036391 |
T |
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| Q |
369 |
tatattatatctgtattttaaaataactcgattcttattgtatgttgatataaaattaatttacattgat |
438 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
46036392 |
tatattatatctgtattttaaaataactcgattcttattgtatgttgatatgaaattaatttacattgat |
46036461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 46035040 - 46035118
Alignment:
| Q |
1 |
catcattttgcaaatagaaacagaggttaatatgtacaccaccaattctggcattggctagctagctacaaatacataa |
79 |
Q |
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| T |
46035040 |
catcattttgcaaatagaaacagaggttaatatgtacaacaccaattctggcattggctagctagctacaaatacataa |
46035118 |
T |
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