View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6154_low_7 (Length: 405)
Name: NF6154_low_7
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6154_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 81 - 232
Target Start/End: Original strand, 6445224 - 6445375
Alignment:
| Q |
81 |
aaaattagctaacactggcgtgcatttcctattttctccttttatgtatggttgtatttcaataaacggttggttgtgtgacagaaaattgttccattca |
180 |
Q |
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| T |
6445224 |
aaaattagctaacactggtgtgcatttcctattttctccttttatgtatggttgtatttcaataaacggttggttgtgtggcagaaaattgttccattca |
6445323 |
T |
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| Q |
181 |
tattcaactgtcattcaatacaaatatatatagaagggttacttatttaaaa |
232 |
Q |
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| T |
6445324 |
tattcaactgtcattcaatacaaatatatatagaagggttacttatttaaaa |
6445375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 262 - 390
Target Start/End: Original strand, 6445369 - 6445496
Alignment:
| Q |
262 |
tttaaaaagattaatgaggaaatggaattatttaccctgaatnnnnnnntgtgatatagatttgagagatgatatgcattcaatcatggatgtcagcagc |
361 |
Q |
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| T |
6445369 |
tttaaaaagattaatgaggaaattgaattaattaccctgaa-aaaaaaatgtgatatagatttgagagatgatatgcattcaatcatggatgtcagcagc |
6445467 |
T |
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| Q |
362 |
agtaggtgagttagtcagaccatgatgat |
390 |
Q |
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| T |
6445468 |
agtaggtgagttagtcagaccatgatgat |
6445496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 85
Target Start/End: Original strand, 6445111 - 6445176
Alignment:
| Q |
20 |
tctagtgcacattcacaccattaatttctttttaatgattaaaactgtattgattacaaggaaaat |
85 |
Q |
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| T |
6445111 |
tctagtgcacattcaatccattaatttctttttaatgattaaaactgtattgattacaaggaaaat |
6445176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 16074620 - 16074561
Alignment:
| Q |
20 |
tctagtgcacattcacaccattaatttctttttaatgattaaaactgtattgattacaag |
79 |
Q |
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| T |
16074620 |
tctagtgcacatccacaccattcatttctttttaatgattagaactgcactgattacaag |
16074561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 8969423 - 8969359
Alignment:
| Q |
20 |
tctagtgcacattcacaccattaatttctttttaatgattaaaactgtattgattacaaggaaaa |
84 |
Q |
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| T |
8969423 |
tctagtgcacatccacacccttcatttctttttaatgattagaattgtacttattacaaggaaaa |
8969359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 27118103 - 27118168
Alignment:
| Q |
19 |
atctagtgcacattcacaccattaatttctttttaatgattaaaactgtattgattacaaggaaaa |
84 |
Q |
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| T |
27118103 |
atctagtgcacatccacaccattcatttctttttaacgattagaactgaacttattacaaagaaaa |
27118168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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