View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6154_low_8 (Length: 367)
Name: NF6154_low_8
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6154_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 46640475 - 46640122
Alignment:
| Q |
1 |
gttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctaagtct |
100 |
Q |
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| T |
46640475 |
gttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctatgtct |
46640376 |
T |
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| Q |
101 |
attaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtg |
200 |
Q |
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| T |
46640375 |
gttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtg |
46640276 |
T |
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| Q |
201 |
cacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640275 |
cacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgc |
46640176 |
T |
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| Q |
301 |
tatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgtgatga |
354 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640175 |
tatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgtgatga |
46640122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 46642767 - 46642414
Alignment:
| Q |
1 |
gttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctaagtct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46642767 |
gttactgatgtctagctcatggagaaggtgaaggtggttgaaactattggggagtgaaccatagaaacggtttgagtttatgtggaaaagagctatgtct |
46642668 |
T |
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| Q |
101 |
attaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642667 |
gttaaaagaccaagttcttctggtaatgaacctgctatgtttgcatggtttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtg |
46642568 |
T |
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| Q |
201 |
cacaaaagatacctgtgtagttgcatacatttgggccataccagtttaaggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgc |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46642567 |
cacaaatgatacctgtgtagttgcatacatttgggccataccagtttaaagtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgc |
46642468 |
T |
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| Q |
301 |
tatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgtgatga |
354 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46642467 |
tatgtaggctttggtgagtcttggatttagtggtggtagagattggtgtgatga |
46642414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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