View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6154_low_9 (Length: 358)
Name: NF6154_low_9
Description: NF6154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6154_low_9 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 21 - 346
Target Start/End: Original strand, 19286293 - 19286617
Alignment:
| Q |
21 |
gcacaagaagtaccaacaggggcaaggagaaatacatagaaagctaaaaaaccagctgaaccaaaaactaaaagagcactaaaaggctcttaagcaacaa |
120 |
Q |
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| T |
19286293 |
gcacaagaagtacaaacagaggcaaggagcaatacatagaaagctaaaaaaccagctgaaccaaaaactaaaagagcactaaaag-ctcttaagcaacag |
19286391 |
T |
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| Q |
121 |
caggcaccaaacacagaaacaaaccaaaaacacctacatgcgtgacagtgaaaaccgcccccttactgtggcatcagaacgaaggaagaatgatggactg |
220 |
Q |
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| T |
19286392 |
caggcaccaaacacaaaaacagaacaaaaacacatacaggcgtgacagtgaaaaccgcccccttactgtggcatcggaacaaaggaagaatgatggattg |
19286491 |
T |
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| Q |
221 |
ttattctaggtcctcttctacaagtacaagtacaacatagtgcataattgtagcaaagtccaattctatagccttggctacaaaaggtacaaacattaca |
320 |
Q |
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| T |
19286492 |
ttattctaggtcctcttctacaagtacaagtacaacatagtgcataattgtagctaagttcaattatatagccttggctacaaaaggtacaaacattaca |
19286591 |
T |
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| Q |
321 |
tacattgcaaacaacatatttagaat |
346 |
Q |
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| T |
19286592 |
tacattgcgaacaacatgtttagaat |
19286617 |
T |
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Target: scaffold0169 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 27889 - 27801
Alignment:
| Q |
19 |
aggcacaagaagtaccaacaggggcaaggagaaatacatagaaagctaaaaaaccagctgaaccaaaaact-aaaagagcactaaaaggctct |
110 |
Q |
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| T |
27889 |
aggcacaagaagtaccaacaggggcaaggagcaata----gaaagttaaaaaaccagctgaaccaaaaactaaaaagagcactaaaaggctct |
27801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 244 - 310
Target Start/End: Complemental strand, 34241872 - 34241806
Alignment:
| Q |
244 |
gtacaagtacaacatagtgcataattgtagcaaagtccaattctatagccttggctacaaaaggtac |
310 |
Q |
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| T |
34241872 |
gtacaagtacaacacagtgcataattgtagccaagtccagttctatagccttggctacaaaaggtac |
34241806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 40929115 - 40929063
Alignment:
| Q |
188 |
gtggcatcagaacgaaggaagaatgatggactgttattctaggtcctcttcta |
240 |
Q |
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| T |
40929115 |
gtggcatcagaacaaaggatgaatgatggattgtgagtttaggtcctcttcta |
40929063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 48504650 - 48504702
Alignment:
| Q |
188 |
gtggcatcagaacgaaggaagaatgatggactgttattctaggtcctcttcta |
240 |
Q |
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| T |
48504650 |
gtggcatcagaacaaaggatgaatgatggattgtgagtttaggtcctcttcta |
48504702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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