View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6155_high_1 (Length: 660)
Name: NF6155_high_1
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6155_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 19 - 651
Target Start/End: Complemental strand, 36523444 - 36522800
Alignment:
| Q |
19 |
attgtaacatatcatcatgttcatcattagttaatctaatnnnnnnnttgtat-------gatgatcaagcataatgaaatattgtaccacatttctaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
36523444 |
attgtaacatatcatcatgttcatcattagttaatctaataaaaaaatggtatagtaaatgatgatcaagcataatgaaatattgtaccacatttctaat |
36523345 |
T |
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| Q |
112 |
tggttacttagattcattacaaaacttacctctattaaatcagcattgcaaccagcatccatgcctctaaagtagggatcaacaaagtgaaattgatgag |
211 |
Q |
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| T |
36523344 |
tggttacttagattcattacaaaacttacctctattaaatcagcattgcaaccagcatccatgcctctaaagtagggatcaacaaagtgaaattgatgag |
36523245 |
T |
|
| Q |
212 |
ataaatctgacacatttcttttgcagccatcaacttcaataccttttgttctctgctttaccttaatcatatttgtnnnnnnnnnnnt-----gatttca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36523244 |
ataaatctgacacatttcttttgcagccatcaacttcaataccttttgttctctgctttaccttaatcatatttgtaaaaaaaaaaaaaaaaagatttca |
36523145 |
T |
|
| Q |
307 |
tttcaccattggactaattaagtttattcacaattcacatttgnnnnnnntaaaatctacaaaacttctatatgaatttagtaatttacctctgagaaag |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523144 |
tttcaccattggactaattaagtttattcacaattcacatttgaaaacaataaaatctacaaaacttctatatgaatttagtaatttacctctgagaaag |
36523045 |
T |
|
| Q |
407 |
gactaaccaatggatctaacttttgtggtcccaacaacactgatctacataacctctcaactttgtctctttccttattgcttttcattgattccttctt |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36523044 |
gactaaccaatggatctaacttttgtggtcccaacaacactgatctacataacctctcaactttgtctctttccttattgcttttcattgattccttctt |
36522945 |
T |
|
| Q |
507 |
gatccttgaaggagttaaatcattgatttcccaaagtgtagcagcaagttttctagcagacacagaaatttctttcttctctttgaagggtaatccagta |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36522944 |
gatccttgaaggagttaaatcattgatttcccaaagtgtagcagcaagttttctagcagacacagaaatttctttcttctctttgaagggtaatccagta |
36522845 |
T |
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| Q |
607 |
cgtgaagaatgcaaagctgtgtttttcatagcatgatgatgatga |
651 |
Q |
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| T |
36522844 |
cgtgaagaatgcaaagctgtctttttcatagcatggtgatgatga |
36522800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 497 - 574
Target Start/End: Original strand, 18972960 - 18973037
Alignment:
| Q |
497 |
attccttcttgatccttgaaggagttaaatcattgatttcccaaagtgtagcagcaagttttctagcagacacagaaa |
574 |
Q |
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|||||||||||| |||||||||| ||||||||||||||||| | | |||||||||||||||||| || ||||||| |
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| T |
18972960 |
attccttcttgacccttgaaggatgcaaatcattgatttcccacaaagaagcagcaagttttctagctgaaacagaaa |
18973037 |
T |
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