View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6155_high_19 (Length: 270)
Name: NF6155_high_19
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6155_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 46922514 - 46922274
Alignment:
| Q |
14 |
atcaggaacataaccagcctccttcatccctcctctgagcttacctagcatagcctgaatttcagagttcctatcatgaaaactatcctttgcttggaaa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
46922514 |
atcaggaacataaccagcctccttcatccctcctctgagcttacctagcatagcctgaatttcagagttcctatcatgagaactatcctttgcttggaaa |
46922415 |
T |
|
| Q |
114 |
acatggattctgttttttacagctatccaactatatccaacatttttctttataccaatgtctttcatttcctttctgacaacagtggcttcttcccatc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46922414 |
acatggattctgttttttacagctatccaactatatccaacatttttctttataccaatgtctttcatttcctttctgacaacagtggcttcttcccatc |
46922315 |
T |
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| Q |
214 |
tgcatttaacaattacaagtatgaccataagagctatgata |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
46922314 |
tgcatttaacaattacaagtatgaccataagagctatgata |
46922274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 68 - 254
Target Start/End: Original strand, 46890473 - 46890649
Alignment:
| Q |
68 |
ctgaatttcagagttcctatcatgaaaactatcctttgcttggaaaacatggattctgttttttacagctatccaactatatccaacatttttctttata |
167 |
Q |
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|||||||||||||||| | |||||| ||||||| |||||||||||||||||||||||||| |||||||| ||||||| || |||||| || |
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| T |
46890473 |
ctgaatttcagagttcatttcatgagaactatcatttgcttggaaaacatggattctgttctttacagcaatccaac----------atatttcttatta |
46890562 |
T |
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| Q |
168 |
ccaatgtctttcatttcctttctgacaacagtggcttcttcccatctgcatttaacaattacaagtatgaccataagagctatgata |
254 |
Q |
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|| |||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46890563 |
ccgttgtctttcattttcttcctgtcaacagtggcttcttcccatctgcatttaacaattacaagcatgaccataagagctatgata |
46890649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 14 - 254
Target Start/End: Complemental strand, 38312886 - 38312646
Alignment:
| Q |
14 |
atcaggaacataaccagcctccttcatccctcctctgagcttacctagcatagcctgaatttcagagttcctatcatgaaaactatcctttgcttggaaa |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38312886 |
atcaggaacataaccagcctccttcatccctcctctgagcttacctagcatagcctgaatttcagagttcctatcatgagaactatcctttgcttggaaa |
38312787 |
T |
|
| Q |
114 |
acatggattctgttttttacagctatccaactatatccaacatttttctttataccaatgtctttcatttcctttctgacaacagtggcttcttcccatc |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38312786 |
acatggattctgttttttacagctatccaactatatccaacatttttctttataccaatgtctttcatttcctttctgacaacagtggcttcttcccatc |
38312687 |
T |
|
| Q |
214 |
tgcatttaacaattacaagtatgaccataagagctatgata |
254 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38312686 |
tgcatttaacaattacaagtatgaccataagagctttgata |
38312646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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