View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6155_high_21 (Length: 241)
Name: NF6155_high_21
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6155_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 38407649 - 38407875
Alignment:
| Q |
1 |
cttttcaaacaaaaatgtttacaatgaactcacttgggacccttcaatatatatgattaatatatccaaacataggaactgaaaatactaaagtgg-ttt |
99 |
Q |
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| T |
38407649 |
cttttcaaacaaaaatgtttacaatgaactcacttgggacccttaaatatatatgattaatatatccaaacataggaactgaaaatactaaagtggtttt |
38407748 |
T |
|
| Q |
100 |
gaatgaacataatttaaattacaaaagctaaaaagctttgattacaagttatgccatgccaggaatctgaccaataaacagtnnnnnnngttgatatatt |
199 |
Q |
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| T |
38407749 |
gaatgaacataattgaaattacaaaagctaaaaagctttgattacaggttatgccatgccaggaatctgacccataaacagtaaaaaaagttgatatatt |
38407848 |
T |
|
| Q |
200 |
atataaattttaaactagaaggtaatt |
226 |
Q |
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| T |
38407849 |
atataaattttaaactagaaagtaatt |
38407875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 38412852 - 38412899
Alignment:
| Q |
97 |
tttgaatgaacata--atttaaattacaaaagctaaaaagctttgatt |
142 |
Q |
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| T |
38412852 |
tttgaatgaacatataattgaaattacaaaagctaaaaagcattgatt |
38412899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 1091793 - 1091752
Alignment:
| Q |
140 |
attacaagttatgccatgccaggaatctgaccaataaacagt |
181 |
Q |
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| T |
1091793 |
attacaagttattccatgccaggaatcagaccactaaacagt |
1091752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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