View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6155_high_3 (Length: 475)
Name: NF6155_high_3
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6155_high_3 |
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| [»] scaffold0148 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 15 - 475
Target Start/End: Complemental strand, 28188 - 27728
Alignment:
| Q |
15 |
gacatcatctttgaggtttataatttgttgaccaacttcagttttcttgtttataattcgtcaaacaaattcagttcacctgaaaaacggaacagatcag |
114 |
Q |
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| T |
28188 |
gacatcagctttgaggtttataatttgttgaccaacttcagttttcttgtttataattcgtcaaacaaattcagttcacctgaaaaacggaacagatcag |
28089 |
T |
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| Q |
115 |
taattcgtaacgaacagtataacaataaaagattgttcctcaattcgacaggtgtgatacagtgggtggaagatgatttgccagttatatggaagcagcc |
214 |
Q |
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| T |
28088 |
taattcgtaacgaacagtataacaataaaagattgttcctcaattccacaggtgtgatacagtgggtggaagatgatttgctagttatatggaagcagcc |
27989 |
T |
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| Q |
215 |
aagaagcaaatgtttaacatataatgcttgtggaaactttgctagctgtaatgacgatgatagcgtttgcaaatgtttaccaggattctacaatgataac |
314 |
Q |
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| T |
27988 |
aagaagcaaatgtttaacatataatgcttgtggaaactttgctagctgtaatgacgatgatagcgtttgcaaatgtttaccaggattctacaatgataac |
27889 |
T |
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| Q |
315 |
cagggagaggaagattcttcacgacattgtacgaggagaaaaacaacattctgttctgaaaatgacatgaagttcttgaacttgaccatgattaaaacag |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
27888 |
cagggagaggaagattcttcacgacattgtacgaggagaaaaacaacattctgtactgaaaatgacacgaagttcttgaacttgaccatgattaaaacag |
27789 |
T |
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| Q |
415 |
gaaagccagataaaaaggcaaccgtggaatctcnnnnnnnntgcgcagatttgtgccatgg |
475 |
Q |
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| T |
27788 |
gaaggccagatataaaggtaaccgtggaatctcaaaaaaaatgcgcagatttgtgccatgg |
27728 |
T |
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