View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6155_high_5 (Length: 464)
Name: NF6155_high_5
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6155_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 5 - 449
Target Start/End: Original strand, 10778510 - 10778958
Alignment:
| Q |
5 |
atgaatcccaaatacttcaaaaatagaagagtactgaccgacacg--tattggatactaataagcatctcatacttcc-gatacgtgtccaaaaagtatc |
101 |
Q |
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| T |
10778510 |
atgaatcccaaatacttcaaaaatagaagagtaccgaccgacacgcgtatcggatactaataagcatctcatacttcccgatacgtgtccaaaaagtatc |
10778609 |
T |
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| Q |
102 |
tgataataatctatactatttaaaa-aatatatattttcacctttacttctcaaatacatcttcaatgctttttaccaactaaagacgcaactgtcatcc |
200 |
Q |
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| T |
10778610 |
tgataataatctatactatttaaaaaaatatatattttcacctttacttctcaaatacatcttcaatgctttttaccaactaaagacgcaactgtcatcc |
10778709 |
T |
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| Q |
201 |
gggatcccggatgcgatgcgtgttccatacgtctaactaactatacacattgaattgtatgtttcttgtgacagattcataacaactatcaccatagata |
300 |
Q |
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| T |
10778710 |
gggatcccggatacgatacgtgttccatacgtctaactaactatacacattgaattgtatgtttcttgtgacagattcataacaactatcaccatagata |
10778809 |
T |
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| Q |
301 |
taatgtttacctggaaaagtgataccaactctggtatttgaaaaatggaagaggcatacattaactccacagcaaaattaattgcaggtccgcaagcatc |
400 |
Q |
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| T |
10778810 |
taatgtttacctggaaaagtgataccaactctggtatttgaaaaatggaagaggcatacattaactccacagcaaaattaattgcaggtccgcaagcatc |
10778909 |
T |
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| Q |
401 |
atgagcacaaacattatcaacacatgtagacacctccattggagagggt |
449 |
Q |
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| T |
10778910 |
atgagcacaaacattatcaacacatgtagacacctccattggagagggt |
10778958 |
T |
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