View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6155_high_6 (Length: 451)

Name: NF6155_high_6
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6155_high_6
NF6155_high_6
[»] chr2 (7 HSPs)
chr2 (86-343)||(1233529-1233770)
chr2 (26-81)||(1233441-1233496)
chr2 (389-443)||(1233816-1233870)
chr2 (286-342)||(35029861-35029917)
chr2 (286-342)||(34229074-34229130)
chr2 (397-442)||(41282855-41282900)
chr2 (286-342)||(34228160-34228216)
[»] chr3 (5 HSPs)
chr3 (286-343)||(40809592-40809649)
chr3 (286-343)||(40810284-40810341)
chr3 (286-342)||(35903702-35903758)
chr3 (286-343)||(8922897-8922954)
chr3 (286-343)||(41325835-41325892)
[»] chr4 (3 HSPs)
chr4 (287-342)||(44516799-44516854)
chr4 (286-342)||(32159521-32159577)
chr4 (286-342)||(39311371-39311427)
[»] chr8 (5 HSPs)
chr8 (286-335)||(8814483-8814532)
chr8 (280-337)||(17943018-17943075)
chr8 (286-343)||(42578722-42578779)
chr8 (290-342)||(11519367-11519419)
chr8 (286-342)||(38444464-38444520)
[»] chr6 (2 HSPs)
chr6 (297-337)||(34260140-34260180)
chr6 (297-337)||(34262190-34262230)
[»] scaffold0402 (1 HSPs)
scaffold0402 (301-337)||(10884-10920)
[»] chr1 (1 HSPs)
chr1 (286-342)||(7338798-7338854)


Alignment Details
Target: chr2 (Bit Score: 153; Significance: 6e-81; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 86 - 343
Target Start/End: Original strand, 1233529 - 1233770
Alignment:
Q  86 aagcatgatggtcttggtactgttgatgggtttggcaacccatggaattaagataagggaaactaactctacctaaaggtggaaaataagagttcaattt 185  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||  |||               ||||||||||| |||||||||||||||||||||    
T  1233529 aagcatgatggtcttggtactgttgatgggtttggca-cccatggaaccaag---------------tctacctaaagatggaaaataagagttcaattt 1233612  T
Q  186 gatatagttggtgaatacctttagtatttcaattacnnnnnnnnnggtacaatttacctatcacattttaatcccccctccaatttaccggtctattttt 285  Q
    ||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1233613 gatatagttggtgaatacctttagtatttcaattactttttttttggtacaatttacctatcacattttaatcccccctccaatttaccagtctattttt 1233712  T
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 343  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1233713 ctccatttaggtttcctcaatttaccccatttgaagtcatggatgtgtgacacgtggc 1233770  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 1233441 - 1233496
Alignment:
Q  26 ctctctaattccattataggctttttactctctcttccaaaattagcaacttattc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1233441 ctctctaattccattataggctttttactctctcttccaaaattagcaacttattc 1233496  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 389 - 443
Target Start/End: Original strand, 1233816 - 1233870
Alignment:
Q  389 ctagttcttctcttgtatctgaaacaacacaccagtctcctttcttcttcttctc 443  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  1233816 ctagttcttctcttgtatccgaagcaacacaccagtctcctttcttcttcttctc 1233870  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 35029917 - 35029861
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 342  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  35029917 ctccatttaggtttcctcaatttaccccatttcaagtcatagatgtgtgacatgtgg 35029861  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 34229130 - 34229074
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 342  Q
    ||||||||| | |||||||||||||| ||||| ||||||| ||||||||||| ||||    
T  34229130 ctccatttaagattcctcaatttaccccattttaagtcatagatgtgtgacatgtgg 34229074  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 41282900 - 41282855
Alignment:
Q  397 tctcttgtatctgaaacaacacaccagtctcctttcttcttcttct 442  Q
    |||||||||||||||||||||| || | | ||||||||||||||||    
T  41282900 tctcttgtatctgaaacaacacgcctgccacctttcttcttcttct 41282855  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 34228160 - 34228216
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 342  Q
    ||||||||| | |||||||||||||| ||||| |||| || ||||||||||| ||||    
T  34228160 ctccatttaagattcctcaatttaccccatttcaagttatagatgtgtgacatgtgg 34228216  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 40809592 - 40809649
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 343  Q
    |||||||| |||||||||||||||   ||||| |||||||||||||||||||||||||    
T  40809592 ctccatttgggtttcctcaatttattccattttaagtcatggatgtgtgacacgtggc 40809649  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 286 - 343
Target Start/End: Complemental strand, 40810341 - 40810284
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 343  Q
    ||||||||| |||||||||||||| | ||||| |||||||||||||||||||| ||||    
T  40810341 ctccatttaagtttcctcaatttatcccattttaagtcatggatgtgtgacacatggc 40810284  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 35903702 - 35903758
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 342  Q
    |||||||||||||  ||||||||||| ||||| |||| |||||||||||||| ||||    
T  35903702 ctccatttaggttctctcaatttaccccatttcaagttatggatgtgtgacatgtgg 35903758  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 8922897 - 8922954
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 343  Q
    |||||||||||||| ||||||||||| |||||    |||||||||||||||| |||||    
T  8922897 ctccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggc 8922954  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 41325835 - 41325892
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 343  Q
    |||||||||||||| ||||||||||| |||||    |||||||||||||||| |||||    
T  41325835 ctccatttaggtttgctcaatttaccccatttatcatcatggatgtgtgacatgtggc 41325892  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 44516799 - 44516854
Alignment:
Q  287 tccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 342  Q
    |||||||||||||||| |||||||||||||| |||| || ||||||||||| ||||    
T  44516799 tccatttaggtttccttaatttacctcattttaagtgatagatgtgtgacatgtgg 44516854  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 32159577 - 32159521
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 342  Q
    |||||||||||||||||||||||||| ||||| |   | ||||||||||||| ||||    
T  32159577 ctccatttaggtttcctcaatttaccccatttcattccttggatgtgtgacatgtgg 32159521  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 39311427 - 39311371
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 342  Q
    ||||||||| | || ||||||||||| ||||| ||||||| ||||||||||| ||||    
T  39311427 ctccatttaagatttctcaatttaccccattttaagtcatagatgtgtgacatgtgg 39311371  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 8814532 - 8814483
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtga 335  Q
    |||||||| ||||||||||||||||| ||||  |||||||||||||||||    
T  8814532 ctccattttggtttcctcaatttaccccattacaagtcatggatgtgtga 8814483  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 280 - 337
Target Start/End: Complemental strand, 17943075 - 17943018
Alignment:
Q  280 atttttctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgaca 337  Q
    ||||| ||||||||   ||| ||||||||||| ||||||||| |||||||||||||||    
T  17943075 attttgctccatttcactttgctcaatttaccccatttgaagacatggatgtgtgaca 17943018  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 343
Target Start/End: Original strand, 42578722 - 42578779
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtggc 343  Q
    ||||||||| |||| ||||||||||| ||||| ||||||| ||||| ||||| |||||    
T  42578722 ctccatttatgtttgctcaatttaccccatttcaagtcatagatgtatgacatgtggc 42578779  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 11519367 - 11519419
Alignment:
Q  290 atttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 342  Q
    ||||||||||| |||||||||| ||||| || |||| ||||||||||| ||||    
T  11519367 atttaggtttcttcaatttaccccatttcaaatcatagatgtgtgacatgtgg 11519419  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 38444520 - 38444464
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 342  Q
    |||||||||| |||||||||||||||  |||| |||| || ||||||||||| ||||    
T  38444520 ctccatttagatttcctcaatttacccaatttcaagttatagatgtgtgacatgtgg 38444464  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 34260140 - 34260180
Alignment:
Q  297 tttcctcaatttacctcatttgaagtcatggatgtgtgaca 337  Q
    ||||||||||||||| ||||| |||||||||||||||||||    
T  34260140 tttcctcaatttaccccatttcaagtcatggatgtgtgaca 34260180  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 34262230 - 34262190
Alignment:
Q  297 tttcctcaatttacctcatttgaagtcatggatgtgtgaca 337  Q
    ||||||||||||||| ||||| |||| ||||||||||||||    
T  34262230 tttcctcaatttaccccattttaagttatggatgtgtgaca 34262190  T

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Target: scaffold0402 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 337
Target Start/End: Original strand, 10884 - 10920
Alignment:
Q  301 ctcaatttacctcatttgaagtcatggatgtgtgaca 337  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  10884 ctcaatttaccccatttgaagacatggatgtgtgaca 10920  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 7338854 - 7338798
Alignment:
Q  286 ctccatttaggtttcctcaatttacctcatttgaagtcatggatgtgtgacacgtgg 342  Q
    ||||||||| |||||||||||||||  ||||| ||||||| ||||||| ||| ||||    
T  7338854 ctccatttatgtttcctcaatttactccatttcaagtcatagatgtgtaacatgtgg 7338798  T

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