View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6155_low_11 (Length: 421)

Name: NF6155_low_11
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6155_low_11
NF6155_low_11
[»] chr1 (2 HSPs)
chr1 (1-407)||(34972043-34972449)
chr1 (53-126)||(11926934-11927007)
[»] chr5 (3 HSPs)
chr5 (12-152)||(34354922-34355062)
chr5 (12-152)||(41721322-41721462)
chr5 (53-137)||(7778237-7778321)
[»] chr4 (4 HSPs)
chr4 (12-152)||(48699086-48699226)
chr4 (15-152)||(42268815-42268952)
chr4 (12-152)||(30947448-30947588)
chr4 (14-150)||(2001791-2001927)
[»] chr3 (2 HSPs)
chr3 (12-152)||(5820540-5820680)
chr3 (12-152)||(42587860-42588000)
[»] chr8 (2 HSPs)
chr8 (15-152)||(9441359-9441496)
chr8 (51-152)||(24595795-24595896)
[»] chr6 (4 HSPs)
chr6 (12-152)||(26978158-26978298)
chr6 (28-152)||(27875990-27876114)
chr6 (53-137)||(8565205-8565289)
chr6 (11-152)||(18148468-18148609)
[»] chr2 (2 HSPs)
chr2 (28-152)||(828391-828515)
chr2 (86-152)||(13842195-13842261)
[»] chr7 (1 HSPs)
chr7 (28-152)||(2324875-2324999)


Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 34972449 - 34972043
Alignment:
Q  1 cttttaccagtagtcttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttgg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34972449 cttttaccagtagtcttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttgg 34972350  T
Q  101 aagttcaacaagctatcatgtcttgtatctatataaggcttccatttcttcacctagagtggctttacacatgttcacaaaacaaaggtatccacttggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34972349 aagttcaacaagctatcatgtcttgtatctatataaggcttctatttcttcacctagagtggctttacacatgttcacaaaacaaaggtatccacttggt 34972250  T
Q  201 aagatttaatttatatcttaaaatggctgagttaaaattatattgtcacacgacgatctcatttgtgggtaatagataaatatctttatatgatctttga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34972249 aagatttaatttatatcttaaaatggctgagttaaaattatattgtcacacgacgatctcatttgtgggtaatagataagtatctttatatgatctttga 34972150  T
Q  301 gtctctagattttctctaacactgatataaactctgaaaattcaactcacacaaacatataattatccatagaaaaagatagtaaggtgttgttaaactt 400  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34972149 gtctctagattttctctaacactgatattaactctgaaaattcaactcacacaaacatataattatccatagaaaaagatagtaaggtgttgttaaactt 34972050  T
Q  401 taaagtt 407  Q
    |||||||    
T  34972049 taaagtt 34972043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 11926934 - 11927007
Alignment:
Q  53 tttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaagctatcatgtcttgt 126  Q
    |||||||||| ||  ||||||||||| |||| ||||  |||| |||||||||||||||||||  ||||||||||    
T  11926934 tttgatcttgtatatccatttgtttcgaatggctttctgaccttttggaagttcaacaagctcacatgtcttgt 11927007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 34355062 - 34354922
Alignment:
Q  12 agtcttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaa 111  Q
    ||||||||| ||||  ||||||||||||||||| ||  ||||||||||||| || |||||||||||| |||| |||| ||||||||||||||||||||||    
T  34355062 agtcttgcacgataccgttccacttgatcattgccatcacgtttgatcttgtatacccatttgtttccaatggctttccgaccctttggaagttcaacaa 34354963  T
Q  112 gctatcatgtcttgtatctatataaggcttccatttcttca 152  Q
    |||  ||||||||||  |||| |||||| ||||||||||||    
T  34354962 gctcccatgtcttgttcctatgtaaggcctccatttcttca 34354922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 41721462 - 41721322
Alignment:
Q  12 agtcttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaa 111  Q
    ||||||||| ||||  ||||||||||||||||| ||  ||||||||||||| || |||||||||||| |||| |||| ||||||||||||||||||||||    
T  41721462 agtcttgcacgataccgttccacttgatcattgccatcacgtttgatcttgtatacccatttgtttccaatggctttccgaccctttggaagttcaacaa 41721363  T
Q  112 gctatcatgtcttgtatctatataaggcttccatttcttca 152  Q
    |||  ||||||||||  |||| |||||| ||||||||||||    
T  41721362 gctcccatgtcttgttcctatgtaaggcctccatttcttca 41721322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 137
Target Start/End: Original strand, 7778237 - 7778321
Alignment:
Q  53 tttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaagctatcatgtcttgtatctatataag 137  Q
    |||||||||| ||  ||||||||||| |||| ||||| |||| |||| |||||||||||| |  |||||||||| ||||| ||||    
T  7778237 tttgatcttgtatatccatttgtttcgaatggctttttgaccttttgaaagttcaacaagatcacatgtcttgtttctatgtaag 7778321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 48699086 - 48699226
Alignment:
Q  12 agtcttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaa 111  Q
    ||||||||| ||||  ||||||||||||||||| ||  ||||||||||||| || |||||||||||| |||| |||| ||||||||||||||||||||||    
T  48699086 agtcttgcacgataccgttccacttgatcattgccatcacgtttgatcttgtatacccatttgtttccaatggctttccgaccctttggaagttcaacaa 48699185  T
Q  112 gctatcatgtcttgtatctatataaggcttccatttcttca 152  Q
    |||  ||||||||||  |||| |||||| ||||||||||||    
T  48699186 gctcccatgtcttgttcctatgtaaggcctccatttcttca 48699226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 152
Target Start/End: Complemental strand, 42268952 - 42268815
Alignment:
Q  15 cttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaagct 114  Q
    |||||| ||||  ||||||||||||||||| ||  ||||||||||||| || |||||||||||| |||| |||| |||||||||||||||||||||||||    
T  42268952 cttgcacgataccgttccacttgatcattgccatcacgtttgatcttgtatacccatttgtttccaatggctttccgaccctttggaagttcaacaagct 42268853  T
Q  115 atcatgtcttgtatctatataaggcttccatttcttca 152  Q
      ||||||||||  |||| |||||| ||||||||||||    
T  42268852 cccatgtcttgttcctatgtaaggcctccatttcttca 42268815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 30947448 - 30947588
Alignment:
Q  12 agtcttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaa 111  Q
    ||||||||| ||||  ||||||||||||||||| ||  ||||||||||||  || |||||||||||| |||| |||||||||||||||||||||||||||    
T  30947448 agtcttgcacgataccgttccacttgatcattgccatcacgtttgatcttatatacccatttgtttccaatggcttttcgaccctttggaagttcaacaa 30947547  T
Q  112 gctatcatgtcttgtatctatataaggcttccatttcttca 152  Q
    |||  ||||||||||   ||  |||||| ||||||||||||    
T  30947548 gctcccatgtcttgttcttacgtaaggcctccatttcttca 30947588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 150
Target Start/End: Complemental strand, 2001927 - 2001791
Alignment:
Q  14 tcttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaagc 113  Q
    ||||||| ||||| |||| |||||||||||   |   |||||||||||| || |||||||||| |  ||| |||| |||||||| ||||||| ||||||     
T  2001927 tcttgcacgatatcgttctacttgatcattactatctcgtttgatcttgtatacccatttgttcccgatggctttccgacccttgggaagttgaacaagt 2001828  T
Q  114 tatcatgtcttgtatctatataaggcttccatttctt 150  Q
    |  ||  | |||| ||||| |||||||||||||||||    
T  2001827 tcccaacttttgtttctatgtaaggcttccatttctt 2001791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 5820540 - 5820680
Alignment:
Q  12 agtcttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaa 111  Q
    ||||||||| ||||  ||||||||||||||||| ||  ||||||||||||| || |||||||||||| |||| |||| ||||||||||||||||||||||    
T  5820540 agtcttgcacgataccgttccacttgatcattgccatcacgtttgatcttgtatacccatttgtttccaatggctttccgaccctttggaagttcaacaa 5820639  T
Q  112 gctatcatgtcttgtatctatataaggcttccatttcttca 152  Q
    |||  ||||||||||  |||| |||||| ||||||||||||    
T  5820640 gctcccatgtcttgttcctatgtaaggcctccatttcttca 5820680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 42588000 - 42587860
Alignment:
Q  12 agtcttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaa 111  Q
    ||||||||| ||||| |||| |||||||||||   |   |||||||||||| || || ||||||| |  ||| |||| |||||||| ||||||| |||||    
T  42588000 agtcttgcacgatatcgttctacttgatcattactatctcgtttgatcttgtatacctatttgttcccgatggctttccgacccttgggaagttgaacaa 42587901  T
Q  112 gctatcatgtcttgtatctatataaggcttccatttcttca 152  Q
    | |  || || |||| ||||| |||||||||||||||||||    
T  42587900 gttcccaagttttgtttctatgtaaggcttccatttcttca 42587860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 152
Target Start/End: Original strand, 9441359 - 9441496
Alignment:
Q  15 cttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaagct 114  Q
    |||||| ||||  ||||||||||||||||| ||  ||||||||||||| || |||||||||||| |||| |||| |||||||||||||||||||||||||    
T  9441359 cttgcacgataccgttccacttgatcattgccatcacgtttgatcttgtatacccatttgtttccaatggctttccgaccctttggaagttcaacaagct 9441458  T
Q  115 atcatgtcttgtatctatataaggcttccatttcttca 152  Q
      ||||||||||  |||| |||||| ||||||||||||    
T  9441459 cccatgtcttgttcctatgtaaggcctccatttcttca 9441496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 24595795 - 24595896
Alignment:
Q  51 cgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaagctatcatgtcttgtatctatataaggcttccatttctt 150  Q
    |||||||||||| || |||||||||| |  ||| |||| |||||||| ||||||| |||||| |  || || |||| ||||| |||||||||||||||||    
T  24595795 cgtttgatcttgtatacccatttgttcccgatggctttccgacccttgggaagttaaacaagttcccaagttttgtttctatgtaaggcttccatttctt 24595894  T
Q  151 ca 152  Q
    ||    
T  24595895 ca 24595896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 26978158 - 26978298
Alignment:
Q  12 agtcttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaa 111  Q
    ||||||||| ||||  ||||||||| ||||||| ||  ||||||||||||| || |||||||||||| |||| |||| ||||||||||||||||||||||    
T  26978158 agtcttgcacgataccgttccactttatcattgccattacgtttgatcttgtatacccatttgtttccaatggctttccgaccctttggaagttcaacaa 26978257  T
Q  112 gctatcatgtcttgtatctatataaggcttccatttcttca 152  Q
    |||  ||||||||||  |||| |||||| ||||||||||||    
T  26978258 gctcccatgtcttgttcctatgtaaggcctccatttcttca 26978298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 27875990 - 27876114
Alignment:
Q  28 gttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaagctatcatgtcttgta 127  Q
    ||||||||||||||||| ||  ||||||||||||| || |||||||||||| |||| |||| |||||||||||||||||||||||||  ||||||||||     
T  27875990 gttccacttgatcattgccatcacgtttgatcttgtatacccatttgtttccaatggctttccgaccctttggaagttcaacaagctcccatgtcttgtt 27876089  T
Q  128 tctatataaggcttccatttcttca 152  Q
     |||| |||||| ||||||||||||    
T  27876090 cctatgtaaggcctccatttcttca 27876114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 8565289 - 8565205
Alignment:
Q  53 tttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaagctatcatgtcttgtatctatataag 137  Q
    |||||||||| ||  ||||||||||| |||||||||| |||| |||||||||||||||||||  |||||||||| ||||| ||||    
T  8565289 tttgatcttgtatatccatttgtttcgaatgactttttgaccttttggaagttcaacaagctcacatgtcttgtttctatgtaag 8565205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 152
Target Start/End: Original strand, 18148468 - 18148609
Alignment:
Q  11 tagtcttgcatgatattgttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaaca 110  Q
    |||||||||| |||||||||| ||| |||||||   |  | ||||||||| | |||  ||||| |||| |||| ||||| ||||||||| ||||| ||||    
T  18148468 tagtcttgcacgatattgttcaactagatcattacaatcatgtttgatctcgtatgttcatttctttccaatgtctttttgaccctttgaaagtttaaca 18148567  T
Q  111 agctatcatgtcttgtatctatataaggcttccatttcttca 152  Q
    ||||  |||||||||| ||| | || ||| ||||||||||||    
T  18148568 agctcccatgtcttgtttctttgtagggcctccatttcttca 18148609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 828515 - 828391
Alignment:
Q  28 gttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaagctatcatgtcttgta 127  Q
    ||||||||||||||||| ||  ||||||||||||| || |||||||||||| |||| |||| |||||||||||||||||||||||||  ||||||||||     
T  828515 gttccacttgatcattgccatcacgtttgatcttgtatacccatttgtttccaatggctttccgaccctttggaagttcaacaagctcccatgtcttgtt 828416  T
Q  128 tctatataaggcttccatttcttca 152  Q
     |||| |||||| ||||||||||||    
T  828415 cctatgtaaggcctccatttcttca 828391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 13842195 - 13842261
Alignment:
Q  86 ttttcgaccctttggaagttcaacaagctatcatgtcttgtatctatataaggcttccatttcttca 152  Q
    ||||||| ||||| ||||||||||||| | || |||||||| ||||| ||||||||  |||||||||    
T  13842195 ttttcgagcctttagaagttcaacaagatctcttgtcttgtttctatgtaaggctttaatttcttca 13842261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 152
Target Start/End: Original strand, 2324875 - 2324999
Alignment:
Q  28 gttccacttgatcattgtcacgacgtttgatcttgcatgcccatttgtttctaatgacttttcgaccctttggaagttcaacaagctatcatgtcttgta 127  Q
    ||||||||||||||||  ||  |||||||||||||  |  ||||||||||| |||| |||| || |||||||||||||||||||| |  | | ||||||     
T  2324875 gttccacttgatcatttccatcacgtttgatcttgtctatccatttgtttccaatggctttccgtccctttggaagttcaacaagttcccctatcttgtt 2324974  T
Q  128 tctatataaggcttccatttcttca 152  Q
    ||||| |||||| ||||||||||||    
T  2324975 tctatgtaaggcctccatttcttca 2324999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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