View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6155_low_15 (Length: 337)

Name: NF6155_low_15
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6155_low_15
NF6155_low_15
[»] chr1 (1 HSPs)
chr1 (1-323)||(34972426-34972748)
[»] chr5 (2 HSPs)
chr5 (17-319)||(41721454-41721760)
chr5 (17-319)||(34355054-34355360)
[»] chr4 (4 HSPs)
chr4 (17-319)||(30947150-30947456)
chr4 (17-319)||(48698788-48699094)
chr4 (17-306)||(42268960-42269253)
chr4 (135-259)||(2001986-2002110)
[»] chr3 (2 HSPs)
chr3 (17-319)||(5820242-5820548)
chr3 (17-259)||(42588057-42588298)
[»] chr2 (1 HSPs)
chr2 (17-319)||(828523-828829)
[»] chr6 (3 HSPs)
chr6 (17-319)||(26977860-26978166)
chr6 (17-319)||(27875676-27875982)
chr6 (141-221)||(18148294-18148374)
[»] chr8 (2 HSPs)
chr8 (17-306)||(9441058-9441351)
chr8 (17-259)||(24595458-24595699)
[»] chr7 (2 HSPs)
chr7 (17-96)||(7506543-7506621)
chr7 (136-259)||(7506660-7506783)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 34972748 - 34972426
Alignment:
Q  1 ttacttacggagttacgaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnn 100  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||        
T  34972748 ttacttacggaattacgaaagaatcaaatctcatgtacc-aacatttgggtgcatgttttagatcgtacatagattcagtcaacctacaaaccaagtttt 34972650  T
Q  101 nnnnc-ccttcttctttgaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagat 199  Q
          |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  34972649 ttttttccttcttctttgaatccttccagttatagtatataaatttccttttcaagctctccatgaagaaaaacactctttgcatctagatgttcaagat 34972550  T
Q  200 gtaaatacaatgcaacacacatagccgccactactctgatagtaggaagtctaacaactgaataaaacattgaagtcaataccttctttatgagcatata 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  34972549 gtaaatacaatgcaacacacatagccgccactactctgatagtagtaagtctaacaactgaataatacattgaagtcaataccttctttatgagcatata 34972450  T
Q  300 cttttaccagtagtcttgcatgat 323  Q
    ||||||||||||||||||||||||    
T  34972449 cttttaccagtagtcttgcatgat 34972426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 41721760 - 41721454
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| |||| || || ||||||||||||| |||||  |||||||| |||||||||         |||| ||| ||    
T  41721760 gaaagaatcaaatctcttgtacc-aacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttcctt 41721662  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     |||||||||  ||  || ||||||||||| | |||||| ||||||||||||||| |  ||||| ||||||| |||||||||||||||| ||| ||| ||    
T  41721661 aaatccttccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagca 41721562  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactgaataaaa-----cattgaagtcaataccttctttatgagcatatacttttaccagta 311  Q
    ||||| |||  ||||||||||||||||| |||||| ||||| | | ||||     |||||||||||||||||||||| ||||||||| ||||||| |  |    
T  41721561 cacatcgccaacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaacca 41721462  T
Q  312 gtcttgca 319  Q
    ||||||||    
T  41721461 gtcttgca 41721454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 34355360 - 34355054
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| |||| || || ||||||||||||| |||||  |||||||| ||||||| |         |||| ||| ||    
T  34355360 gaaagaatcaaatctcttgtacc-aacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaggttttcttttccttgttcctt 34355262  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     |||||||||  ||  || || |||||||| | |||||| ||||||||||||||| |  ||||| |||| || |||||||||||||||| ||||||| ||    
T  34355261 aaatccttccggttggagcatctaaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagca 34355162  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactgaataaaa-----cattgaagtcaataccttctttatgagcatatacttttaccagta 311  Q
    ||||| |||  ||||||||||||| ||| |||||| ||||| | | ||||     |||||||||||||||||||||| ||||||||| ||||||| |  |    
T  34355161 cacatcgccaacactactctgataatagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaacca 34355062  T
Q  312 gtcttgca 319  Q
    ||||||||    
T  34355061 gtcttgca 34355054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 30947150 - 30947456
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| |||| || || ||||||||||||| |||||  |||||||| |||||||||         |||| ||| ||    
T  30947150 gaaagaatcaaatctcttgtacc-aacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttcctt 30947248  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     |||||||||  ||  || ||||||||||| | |||||| ||||||||||||||| |  ||||| ||||||| |||||||||||||||| ||||||| ||    
T  30947249 aaatccttccggttgaagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaatgcagca 30947348  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactgaataaaa-----cattgaagtcaataccttctttatgagcatatacttttaccagta 311  Q
    ||||| |||  ||||||||| ||||||| |||||| ||||| | | ||||     |||||||||||||||||||||| ||||||||| ||||||| |  |    
T  30947349 cacattgccaacactactctaatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaacca 30947448  T
Q  312 gtcttgca 319  Q
    ||||||||    
T  30947449 gtcttgca 30947456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 48698788 - 48699094
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| |||| || || ||||||||||||| |||||  |||||||| |||||||||         |||| ||| ||    
T  48698788 gaaagaatcaaatctcttgtacc-aacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttcctt 48698886  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     |||||||||  ||  || ||||||||||| | |||||| ||||||||||||||| |  ||||| ||||||| |||||||||||||||| ||| ||| ||    
T  48698887 aaatccttccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagca 48698986  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactgaataaaa-----cattgaagtcaataccttctttatgagcatatacttttaccagta 311  Q
    ||||| |||  ||||||||||||||||| |||||| ||||| | | ||||     |||||||||||||||||||||| ||||||||| ||||||| |  |    
T  48698987 cacatcgccaacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaacca 48699086  T
Q  312 gtcttgca 319  Q
    ||||||||    
T  48699087 gtcttgca 48699094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 306
Target Start/End: Complemental strand, 42269253 - 42268960
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| |||| || || ||||||||||||| |||||  |||||||| |||||||||         |||| ||| ||    
T  42269253 gaaagaatcaaatctcttgtacc-aacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttcctt 42269155  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     |||||||||  ||  || ||||||||||| | |||||| ||||||||||||||| |  ||||| ||||||| |||||||||||||||| ||| ||| ||    
T  42269154 aaatccttccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagca 42269055  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactgaataaaa-----cattgaagtcaataccttctttatgagcatatacttttac 306  Q
    ||||| |||  ||||||||||||||||| |||||| ||||| | | ||||     |||||||||||||||||||||| ||||||||| |||||||    
T  42269054 cacatcgccaacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttac 42268960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 259
Target Start/End: Complemental strand, 2002110 - 2001986
Alignment:
Q  135 tatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaacacacatagccgccactact 234  Q
    |||||| ||||| | |||||||||||| ||||||||| |  | ||| ||||||  |||||||||| |||||  || ||| |||||||||||   |||| |    
T  2002110 tatatatatttcttcttcaagctctccgtgaagaaaagcagtttttacatctaattgttcaagatataaatcaaacgcagcacacatagccaaaactatt 2002011  T
Q  235 ctgatagtaggaagtctaacaactg 259  Q
    ||||| ||||  |||||||||||||    
T  2002010 ctgatggtagtgagtctaacaactg 2001986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 5820242 - 5820548
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| |||| || || ||||||||||||| |||||  |||||||| |||||||||         |||| ||| ||    
T  5820242 gaaagaatcaaatctcttgtacc-aacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttcctt 5820340  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     |||||||||  ||  || ||||||||||| | |||||| ||||||||||||||| |  ||||| ||||||| |||||||||||||||| ||| ||| ||    
T  5820341 aaatccttccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagca 5820440  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactgaataaaa-----cattgaagtcaataccttctttatgagcatatacttttaccagta 311  Q
    ||||| |||  ||||||||||||||||| |||||| ||||| | | ||||     |||||||||||||||||||||| ||||||||| ||||||| |  |    
T  5820441 cacatcgccaacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaacca 5820540  T
Q  312 gtcttgca 319  Q
    ||||||||    
T  5820541 gtcttgca 5820548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 259
Target Start/End: Complemental strand, 42588298 - 42588057
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| | || || |||||||||||||| | |||||  |||||||| |||||||||         |||| |||||     
T  42588298 gaaagaatcaaatctcttgtacc-aacatctaggcgcctgttttagaccgtatagagatttggtcaacctgcaaaccaagttttcctttccttgttcttc 42588200  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     || |||||   ||  || ||||| ||||| | ||||||||||||||||||||||    | ||| ||||||  ||||||||||||||||  || ||||||    
T  42588199 aaaaccttctggttggagcatatatatttcttcttcaagctctccatgaagaaaagaagtttttacatctaattgttcaagatgtaaatcaaacgcaaca 42588100  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactg 259  Q
    ||||||||    |||| ||||||||| |  |||||||||||||    
T  42588099 cacatagctaaaactattctgatagttgtgagtctaacaactg 42588057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 828829 - 828523
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| |||| || || ||||||||||||| |||||  |||||||| |||||||||         |||| ||| ||    
T  828829 gaaagaatcaaatctcttgtacc-aacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttcctt 828731  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     |||||||||  ||  || ||||||||||| | |||||| ||||||||||||||| |  ||||| |||| || |||||||||||||||| ||||||| ||    
T  828730 aaatccttccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatccagctgttcaagatgtaaatccaatgcagca 828631  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactgaataaaa-----cattgaagtcaataccttctttatgagcatatacttttaccagta 311  Q
    ||||| |||  ||||||||||||||||| |||||| ||||| | | ||||     |||||||||||||||||||||| ||||||||| ||||||| |  |    
T  828630 cacatcgccaacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaacca 828531  T
Q  312 gtcttgca 319  Q
    ||||||||    
T  828530 gtcttgca 828523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 26977860 - 26978166
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| |||| || || ||||||||||||| |||||  |||||||| |||||||||         |||| ||| ||    
T  26977860 gaaagaatcaaatctcttgtacc-aacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttcctt 26977958  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     |||||||||  ||  || ||||||||||| | |||||| ||||||||||||||| |  ||||| ||||||| |||||||||||||||| ||| ||| ||    
T  26977959 aaatccttccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgcagca 26978058  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactgaataaaa-----cattgaagtcaataccttctttatgagcatatacttttaccagta 311  Q
    ||||| |||  ||||||| ||||||||| |||||| ||||| | | ||||     |||||||||||||||||||||| ||||||||| ||||||| |  |    
T  26978059 cacatcgccaacactactttgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaacca 26978158  T
Q  312 gtcttgca 319  Q
    ||||||||    
T  26978159 gtcttgca 26978166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 319
Target Start/End: Original strand, 27875676 - 27875982
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| |||| || || |||||||  |||| |||||  |||||||| |||||||||         |||| ||| ||    
T  27875676 gaaagaatcaaatctcttgtacc-aacatctgggcgcctgctttagactttacagagatttggtcaacctgcaaaccaagttttcttttccttgttcctt 27875774  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     |||||||||  ||  || ||||||||||| | |||||| |||||||||||||||||  ||||| |||| || |||||||||||||||| ||||||| ||    
T  27875775 aaatccttccggttggagcatataaatttcttcttcaagttctccatgaagaaaaacagtctttacatccagctgttcaagatgtaaatccaatgcagca 27875874  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactgaataaaa-----cattgaagtcaataccttctttatgagcatatacttttaccagta 311  Q
    ||||| |||  ||||||||||||||||| |||||| ||||| | | ||||     |||||||||||||||||||||| ||||||||| ||||||| |  |    
T  27875875 cacatcgccaacactactctgatagtagtaagtctgacaaccgtagaaaatatctcattgaagtcaataccttctttctgagcatatccttttacaacca 27875974  T
Q  312 gtcttgca 319  Q
    ||||||||    
T  27875975 gtcttgca 27875982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 18148294 - 18148374
Alignment:
Q  141 aatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaacacacat 221  Q
    |||||| | ||||||||||| | | |||||||| |||||| ||||||  | |||||||||||||| |||||||||||||||    
T  18148294 aatttcttcttcaagctctctaggtagaaaaacactctttacatctaactattcaagatgtaaatccaatgcaacacacat 18148374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 17 - 306
Target Start/End: Original strand, 9441058 - 9441351
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| |||| || || ||||||||||||| |||||  |||||||| |||||||||         |||| ||| ||    
T  9441058 gaaagaatcaaatctcttgtacc-aacatctgggcgcctgctttagaccgtacagagatttggtcaacctgcaaaccaagttttcttttccttgttcctt 9441156  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     |||||||||  ||  || ||||||||||| | |||||| ||||||||||||||| |  ||||| ||||||| |||||||||||||||| ||| | | ||    
T  9441157 aaatccttccggttggagcatataaatttcttcttcaagttctccatgaagaaaagcagtctttacatctagctgttcaagatgtaaatccaacgaagca 9441256  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactgaataaaa-----cattgaagtcaataccttctttatgagcatatacttttac 306  Q
    ||||| |||  ||||||||||||||||| |||||| ||||| | | ||||     |||||||||||||||||||||| ||||||||| |||||||    
T  9441257 cacatcgccaacactactctgatagtagtaagtctgacaaccggagaaaatatctcattgaagtcaataccttctttctgagcatatccttttac 9441351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 259
Target Start/End: Original strand, 24595458 - 24595699
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaagcnnnnnnncccttcttcttt 116  Q
    |||||||||||||||| |||||| ||||| | || || |||||||||||||||| |||||  |||||| | |||||||||         |||| |||||     
T  24595458 gaaagaatcaaatctcttgtacc-aacatctaggcgcctgttttagaccgtacagagatttggtcaacttgcaaaccaagttttcctttccttgttcttc 24595556  T
Q  117 gaatccttccaattatagtatataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaaca 216  Q
     || |||||   ||  || ||||| ||||| | |||||||||||||||||||||| |  | ||| ||||||  ||||||||||||||||  || ||||||    
T  24595557 aaaaccttctggttggagcatatatatttcttcttcaagctctccatgaagaaaagcagtttttacatctaattgttcaagatgtaaatcaaacgcaaca 24595656  T
Q  217 cacatagccgccactactctgatagtaggaagtctaacaactg 259  Q
    |||||||||   |||| ||||||||| |  |||||||||||||    
T  24595657 cacatagccaaaactattctgatagttgtgagtctaacaactg 24595699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 7506543 - 7506621
Alignment:
Q  17 gaaagaatcaaatctcatgtacccaacatttgggtgcatgttttagaccgtacatagattcagtcaacctacaaaccaag 96  Q
    |||||||||||||||| |||||| ||||| | || ||||||||||||||||||| |||||  |||||| | |||||||||    
T  7506543 gaaagaatcaaatctcttgtacc-aacatctaggcgcatgttttagaccgtacaaagatttggtcaacatgcaaaccaag 7506621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 259
Target Start/End: Original strand, 7506660 - 7506783
Alignment:
Q  136 atataaatttcattttcaagctctccatgaagaaaaacgctctttgcatctagatgttcaagatgtaaatacaatgcaacacacatagccgccactactc 235  Q
    ||||| ||||| | |||||||| ||||||||||||| |  | ||| ||||||  ||||||||||||||||  || ||| |||||||||||   |||| ||    
T  7506660 atatatatttcttcttcaagctgtccatgaagaaaagcagtttttacatctaattgttcaagatgtaaatcaaacgcagcacacatagccaaaactattc 7506759  T
Q  236 tgatagtaggaagtctaacaactg 259  Q
    |||| |||   |||||||||||||    
T  7506760 tgatggtaatgagtctaacaactg 7506783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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