View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6155_low_2 (Length: 514)
Name: NF6155_low_2
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6155_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 13 - 470
Target Start/End: Complemental strand, 24308825 - 24308367
Alignment:
| Q |
13 |
aaaatcaccaaagcctgatttcgatcatgatctagatccaaagccttcttcctcaccaccatcatcaccttgttcatttgcgccactgtcctcagctgga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24308825 |
aaaatcaccaaagcctgatttcgatcatgatctagatccaaagccttcttcctcaccaccatcatcaccttgttcatttgcgccactgtcctcagctgga |
24308726 |
T |
|
| Q |
113 |
gatgaagcattcaacacaccccggtaaaaggcatggcctaaggccatacaacatgggccaagtaggttatcagatccatctgctgataattgcgggattt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24308725 |
gatgaagcattcaacacaccccggtaaaaggcatggcctaaggccatacaacatgggccaagtaggttatcagatccatctgctgataattgcgggattt |
24308626 |
T |
|
| Q |
213 |
tggattctacatttgtagctgcaacctgcacattgaatcatgtatagaagaaaaagacctttgttggacgtcagcagtgttccatctacgtgcgaatgag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24308625 |
tggattctacatttgtagctgcaacctgcacattgaatcatgtatagaagaaaaagacctttgttggacgtcagcagtgttccatctatgtgcgaatgag |
24308526 |
T |
|
| Q |
313 |
gcctt-aatcagggatccctatcagcaaactcgttagttgcagcaaaagatgattcccctggtccatatgggattggttgtgggcgaggtcggttaatag |
411 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
24308525 |
gccttgaatcagggatccctatcagcaaactcgttagttgcagcaaaagatgattcccctggtccatatgggattggttgtgggtgaggtcagttaatag |
24308426 |
T |
|
| Q |
412 |
ctggtttccgacattttggtgtgcaataccttgcaacatatccctcatctatggttttg |
470 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24308425 |
ttggtttccgacattttgttgtgcaataccttgcaacatatccctcatctatggttttg |
24308367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 467 - 501
Target Start/End: Complemental strand, 24308322 - 24308288
Alignment:
| Q |
467 |
tttgtacaatcctatggttaatccagagaacatca |
501 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
24308322 |
tttgtacaatcctatggttaatccagagaacatca |
24308288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University