View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6155_low_23 (Length: 233)
Name: NF6155_low_23
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6155_low_23 |
 | |
|
| [»] scaffold0532 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 226
Target Start/End: Complemental strand, 45077299 - 45077084
Alignment:
| Q |
17 |
attatgttgtgagtaataaccatgatgctataattagtttgtgatcctacagttattgtgtaataatcctataatatcgggattaat---gttccaatag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
45077299 |
attatgttgtgagtaataaccatgatgctacaattagtttgtgatcctacggttattgtgtaataatcctataatatcagtattaataatgttccaatag |
45077200 |
T |
|
| Q |
114 |
agagaaaaccaaaacatcttataatttgaagaggaaggaatataccgttgaatgaagatatttttcct---acaaacatttgacttacaattaaaatatg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
45077199 |
agagaaaaccaaaacatcttataatttgaagaggaaggaatataccgttgaatgtagatatttttcctttgacaagcatttgacttacaattaaaatata |
45077100 |
T |
|
| Q |
211 |
atagtatcaaatatta |
226 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
45077099 |
atagtatcaaatatta |
45077084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0532
Description:
Target: scaffold0532; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 9254 - 9350
Alignment:
| Q |
17 |
attatgttgtgagtaataaccatgatgctataattagtttgtgatcctacagttattgtgtaataatcctataatatcgggattaatgttccaatag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
9254 |
attatgttgtgagtaataaccatgatgctacaattagtttgtgatcctacagttattgtgtaataatcctataatatcagtattaatgttccaatag |
9350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 113
Target Start/End: Complemental strand, 20890633 - 20890537
Alignment:
| Q |
17 |
attatgttgtgagtaataaccatgatgctataattagtttgtgatcctacagttattgtgtaataatcctataatatcgggattaatgttccaatag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
20890633 |
attatgttgtgagtaataaccatgatgctacaattagtttgtgatcctacagttattgtgtaataatcctataatatcagtattaatgttccaatag |
20890537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 112
Target Start/End: Complemental strand, 20895092 - 20894997
Alignment:
| Q |
17 |
attatgttgtgagtaataaccatgatgctataattagtttgtgatcctacagttattgtgtaataatcctataatatcgggattaatgttccaata |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
20895092 |
attatgttgtgagtaataaccatgatgctacaattagtttgtgatcctacagttattgtgtaataatcctataatatcagtattaatgttccaata |
20894997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University