View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6155_low_25 (Length: 221)
Name: NF6155_low_25
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6155_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 8269713 - 8269510
Alignment:
| Q |
1 |
atacaacaactaaaaagtatgctacttaaccnnnnnnnnnnnntcacggagagaaattttttgaaaacacacttttttgttctgccaccaatggcaaact |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8269713 |
atacaacaactaaaaattatgctacttaaccaaaaataaaaaatcacggagagaatttttttgaaaacacactgttttgttctgccaccaatggcaaact |
8269614 |
T |
|
| Q |
101 |
ctagagtttgagttacattagtgtggaactcacaaaatgctcttggtaaatgttgaattcttccaaggacctgtaaatgttgaactcacagtgtaaacca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8269613 |
ctagagtttgagttacattagtgtggaactcacaaaatgctcttggtaaatgttgaattcttccaaggacctgtaaatgttgaactcacagtgtaaacca |
8269514 |
T |
|
| Q |
201 |
tgct |
204 |
Q |
| |
|
|||| |
|
|
| T |
8269513 |
tgct |
8269510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University