View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6155_low_26 (Length: 221)
Name: NF6155_low_26
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6155_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 207
Target Start/End: Original strand, 17701376 - 17701570
Alignment:
| Q |
16 |
atagggtttgttcatgatgttgtgagtgtttggctcaggagagtgtacnnnnnnnctatagggtttgaacttagggtttgaaccttgttgtttctgaatt |
115 |
Q |
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| T |
17701376 |
atagtgtttgttcatgatgttgtgagtgatttgctcaggagagtgtacagaaaaactatagggtttgaacttagggtttgaatcttggtgtttctcaatt |
17701475 |
T |
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| Q |
116 |
tcagtatcatga---tattcatagttgtttttgggtttgtgatcaatagaatgatgaaaatggaaatagggtgaagaaaaagaactcatcatgat |
207 |
Q |
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| T |
17701476 |
tcattaccatgatgatattcatagttgtttttgggtttgtgatcgattgaatgatgaaaatggaaatagggtgaagaaaaagaactcttcatgat |
17701570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 212
Target Start/End: Complemental strand, 17662703 - 17662519
Alignment:
| Q |
16 |
atagggtttgttcatgatgttgtgagtgtttggctcaggagagtgtacnnnnnnnctatagggtttgaact-tagggtttgaaccttgttgtttctgaat |
114 |
Q |
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| T |
17662703 |
atagggtttgttcatgatgttgtgagtgtttggctcaggagagtgtacaaaaaa-------------aactatagggtttgaaccttgtt---tctgaat |
17662620 |
T |
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| Q |
115 |
ttcagtatcatgat---attcatagttgtttttgggtttgtgatcaatagaatgatgaaaatggaaatagggtgaagaaaaagaactcatcatgatgatg |
211 |
Q |
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||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17662619 |
ttcagtaccatgatgatattcatagttgtttttgggtttgtgatcaatagaatgatgaaaatggaaatagggtgaagaaaaagaactcatcatgatgatg |
17662520 |
T |
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