View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6155_low_8 (Length: 445)
Name: NF6155_low_8
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6155_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 36979122 - 36978694
Alignment:
| Q |
10 |
catcatcagccacagtagaaactaaaggaacagcaaagagtgacaaagctggtgaagagtatctcaagagttctacgcagaaggaactgcaggaagagtg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36979122 |
catcatcagccacagtagaaactaaaggaacagcaaagagtgacaaagctggtgaagagtatctcaagagttctacgcagaaggaactgcaggaagagtg |
36979023 |
T |
|
| Q |
110 |
gccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaacacagggctagttgtgaagctgctttgaaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36979022 |
gccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaacacagggctagttgtgaagctgctttgaaa |
36978923 |
T |
|
| Q |
210 |
gcaaagaagcaagctgctctgcagaagctcaacatctatcagtccaaagaggaggtgaaacagaagaatgttagcgataagttcaattccaatgttaaga |
309 |
Q |
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| T |
36978922 |
gcaaagaagcaagctgctctgcagaagctgaacatctatcagtccaaagaggaggtgaaacagaaggatgttagcaataagttcaattccaatgttaaga |
36978823 |
T |
|
| Q |
310 |
gtggagataatattcttaagaaaggattaaagggaacagtagtgatggatgataaggtgcaaaagaaccaggctgagcctgttaggacgtataattcgaa |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
36978822 |
gtggagataatattcttaagaaaggattaaagggaacagtagtgatggatgataaggtgcaaaagaaccaggctgagcctgttaggacgcataattcaaa |
36978723 |
T |
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| Q |
410 |
atcaatatgtagagtctgtgatgatgtcc |
438 |
Q |
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| T |
36978722 |
atcaatatgtagagtctgtgatgttgtcc |
36978694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 82 - 236
Target Start/End: Complemental strand, 36979906 - 36979752
Alignment:
| Q |
82 |
ctacgcagaaggaactgcaggaagagtggccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaaca |
181 |
Q |
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|||| ||||||||| ||| | |||||||| |||| ||||| || | ||||||||| |||||| |||||||||||||||| ||| |||||||||||||||| |
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| T |
36979906 |
ctacacagaaggaagtgccgaaagagtggacttgtgctttatgtttggtaacaacttcgagccagataaccttgaattctcatattaatgggaggaaaca |
36979807 |
T |
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| Q |
182 |
cagggctagttgtgaagctgctttgaaagcaaagaagcaagctgctctgcagaag |
236 |
Q |
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||| ||| ||||||||| ||||||||||||||||||||| |||||| ||||||| |
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| T |
36979806 |
cagagctgcttgtgaagcagctttgaaagcaaagaagcaacctgctccgcagaag |
36979752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 153 - 219
Target Start/End: Complemental strand, 36984462 - 36984396
Alignment:
| Q |
153 |
ttgaattcccatcttaatgggaggaaacacagggctagttgtgaagctgctttgaaagcaaagaagc |
219 |
Q |
| |
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| T |
36984462 |
ttgaattcccatcttaatgggaggaaacacagagctgcttgtgaagcagctttgaaagcaaagaagc |
36984396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 36996587 - 36996413
Alignment:
| Q |
10 |
catcatcagccacagtagaaactaaaggaacagcaaagagtgacaaagctggtgaagagtatctcaagagttctacgcagaaggaactgcaggaagagtg |
109 |
Q |
| |
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||||||||| |||||| |||||||||||||||||| ||||||||| |||||||| ||||| || ||| || ||| ||||||||| ||||| || |||| |
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| T |
36996587 |
catcatcagtcacagtggaaactaaaggaacagcagagagtgacagagctggtggagagtttccaaaggattgtacacagaaggaaatgcagaaaaagtg |
36996488 |
T |
|
| Q |
110 |
gccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaacacag |
184 |
Q |
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| T |
36996487 |
gacttgtgctttatgtttggtaacaactacaagcaataaagacttgaattcgcacctcactgggaggaaacacag |
36996413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 36980712 - 36980522
Alignment:
| Q |
10 |
catcatcagccacagtagaaactaaaggaacagcaaagagtgacaaagctggtgaaga-gtatctcaagagttctacgcagaaggaactgcaggaagagt |
108 |
Q |
| |
|
||||||||| |||||| ||||| |||||||||||| ||||||| | ||||||| ||| || ||| ||||||||| ||||||||| ||||| ||||| |
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| T |
36980712 |
catcatcagtcacagtggaaaccaaaggaacagcagagagtgaaagggctggtggagaagttcctcg-gagttctacacagaaggaagtgcagagagagt |
36980614 |
T |
|
| Q |
109 |
ggccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaacacagggctagttgtgaagct |
200 |
Q |
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| T |
36980613 |
ggacttgtgctatatgtttggtaacaacatcgcgtgagaaagacttgatttcccaccttaatggaaggaaacacagggatactagtgaagct |
36980522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 37000469 - 37000387
Alignment:
| Q |
129 |
gtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaacacagggctagttgtgaagctgctttgaaagc |
211 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||| || |||||||||||||||| ||||| ||||||| ||||||||||| |
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| T |
37000469 |
gtaacaacatcgagcgagaaaactttgaattcccacctcaatgggaggaaacacaaggctaattgtgaattagctttgaaagc |
37000387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 36995883 - 36995772
Alignment:
| Q |
10 |
catcatcagccacagtagaaactaaaggaacagcaaagagtgacaaagctggtgaagagtatctcaagagttctacgcagaaggaactgcaggaagagtg |
109 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||| |||||| || |||| ||| |||| || |||||||||| ||||||| | ||||| ||||||| |
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| T |
36995883 |
catcatcagccataatagaaaccaaaggaacagcagagagtgtcacagcttgtggagaggttcctcagagttctacacagaaggcagtgcagaaagagtg |
36995784 |
T |
|
| Q |
110 |
gccttgcgcttt |
121 |
Q |
| |
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| |||| ||||| |
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| T |
36995783 |
gacttgtgcttt |
36995772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 184
Target Start/End: Complemental strand, 36986329 - 36986225
Alignment:
| Q |
80 |
ttctacgcagaaggaactgcaggaagagtggccttgcgctttgtgctcggtaacaacatcgagcaagataaccttgaattcccatcttaatgggaggaaa |
179 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||| |||| ||||| || | |||||||||| |||| ||| || |||||||||||| || | ||| | |||| |
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| T |
36986329 |
ttctacacagaaggaagtgcagaaagagtggacttgtgctttatgtttggtaacaacaacgagtgagaaaatcttgaattcccacctgagtggaaagaaa |
36986230 |
T |
|
| Q |
180 |
cacag |
184 |
Q |
| |
|
||||| |
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|
| T |
36986229 |
cacag |
36986225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 315
Target Start/End: Complemental strand, 36984380 - 36984318
Alignment:
| Q |
253 |
ccaaagaggaggtgaaacagaagaatgttagcgataagttcaattccaatgttaagagtggag |
315 |
Q |
| |
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|||||||||||||||||||| ||||| ||||| ||||||| ||||| ||||| ||| ||||| |
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|
| T |
36984380 |
ccaaagaggaggtgaaacaggagaattttagcaataagttaaattctgatgttgagaatggag |
36984318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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