View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6155_low_9 (Length: 436)
Name: NF6155_low_9
Description: NF6155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6155_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 8270138 - 8269956
Alignment:
| Q |
16 |
ataacatggatcattgtttttcaaccacttcaacttcaacttcaacacaacaaaatcgttgtgttgaacatgcttcaagcttgaagaagaggttccttaa |
115 |
Q |
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| T |
8270138 |
ataacatggatcattgtttttcaaccacttcaacttcaac------acaacaaaatcgttgtgttgaacatgcttcaagcttgaagaagaggttccttaa |
8270045 |
T |
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| Q |
116 |
caaggcaaaggaacagaggtctaggctctatatattaaagaggtgcattattatattactatgttggcaaaagtacgaccattgttaga |
204 |
Q |
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| T |
8270044 |
caaggcaaaggaacagaggtctaggctctatatattaaagaggtgcattattatattactatgttggcaaaagtacgaccattgttaga |
8269956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 271 - 428
Target Start/End: Complemental strand, 8269889 - 8269733
Alignment:
| Q |
271 |
agttatcaaatttcaatacaatattaattgttgttttaccaataatattttaaattacttattatagatagagaaatagataaaaatacgattagaaagg |
370 |
Q |
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| T |
8269889 |
agttatcaaatttcaatgcaatattaattgtcattttaccaataatattttaaattacttattatagatagagaaatagataaaaatacgattagaaagg |
8269790 |
T |
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| Q |
371 |
gttatagnnnnnnngtttgctagttttatcaaaaagaattatatttattgatattctt |
428 |
Q |
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| T |
8269789 |
gttatagaaaaaaa-tttgctagttttataaaaaataataatatttattgatattctt |
8269733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 314
Target Start/End: Original strand, 10263803 - 10263841
Alignment:
| Q |
276 |
tcaaatttcaatacaatattaattgttgttttaccaata |
314 |
Q |
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| T |
10263803 |
tcaaatttcaatgcaatattaaatgttgttttaccaata |
10263841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 89 - 193
Target Start/End: Complemental strand, 55245696 - 55245592
Alignment:
| Q |
89 |
ttcaagcttgaagaagaggttccttaacaaggcaaaggaacagaggtctaggctctatatattaaagaggtgcattattatattactatgttggcaaaag |
188 |
Q |
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|||||||||||||||||||||||| || | || || ||| ||||||| |||||||| ||| ||||||||||||||||||| |||||||||||||| ||| |
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| T |
55245696 |
ttcaagcttgaagaagaggttcctcaagagagctaaagaagagaggtccaggctctacatactaaagaggtgcattattatgttactatgttggcacaag |
55245597 |
T |
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| Q |
189 |
tacga |
193 |
Q |
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||||| |
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| T |
55245596 |
tacga |
55245592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 355
Target Start/End: Complemental strand, 3237420 - 3237347
Alignment:
| Q |
282 |
ttcaatacaatattaattgttgttttaccaataatattttaaattacttattatagatagagaaatagataaaa |
355 |
Q |
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||||||| |||||||||| ||||||| |||||||||||| || || ||||| |||| ||| | |||||||||| |
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| T |
3237420 |
ttcaatataatattaattattgttttgtcaataatatttttaactatttattctagagagaaagatagataaaa |
3237347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 36750233 - 36750265
Alignment:
| Q |
282 |
ttcaatacaatattaattgttgttttaccaata |
314 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
36750233 |
ttcaatacaatattaaatgttgttttaccaata |
36750265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 282 - 314
Target Start/End: Complemental strand, 16701080 - 16701048
Alignment:
| Q |
282 |
ttcaatacaatattaattgttgttttaccaata |
314 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
16701080 |
ttcaatacaatattaaatgttgttttaccaata |
16701048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 39663796 - 39663832
Alignment:
| Q |
276 |
tcaaatttcaatacaatattaattgttgttttaccaa |
312 |
Q |
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|||||||| ||||||||||||| |||||||||||||| |
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| T |
39663796 |
tcaaattttaatacaatattaaatgttgttttaccaa |
39663832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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