View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6156_high_2 (Length: 383)
Name: NF6156_high_2
Description: NF6156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6156_high_2 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 11319525 - 11319155
Alignment:
| Q |
12 |
agattatactaaccatcaagagtgttctatatggtgtgaagaaaattaaattaattatattggtttattggcaagaaaggcttaattatatgctcataaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11319525 |
agattatactaaccatcaagagtgttctatatggtgtgaagaaaattaaattaattatattggtt-attggcaagaaaggcttaattatatgctcataaa |
11319427 |
T |
|
| Q |
112 |
acgctttaacgtttcttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11319426 |
acgctttaacgtttcttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggc |
11319327 |
T |
|
| Q |
212 |
gtttcctgtgttccttagatcatattttttctgaattttgtaatttcatgttattgcacactgagttctgatggatgaaaagagctgtattcaaagaaaa |
311 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11319326 |
gtttcctgtgttcctcagatcatgttttttctgaattttataatttcatgttattgcacactgagttctgatggatgaaaagagctgtattgaaagaaaa |
11319227 |
T |
|
| Q |
312 |
aatgttgttgcataattatgagactagagagacaaagaagttctaggcatccttaatgccattagctaggtg |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11319226 |
aatgttgttgcataattatgagactagagagacaaagaagttctaggcatccttaatgccattagctaggtg |
11319155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 12 - 383
Target Start/End: Complemental strand, 11477546 - 11477176
Alignment:
| Q |
12 |
agattatactaaccatcaagagtgttctatatggtgtgaagaaaattaaattaattatattggtttattggcaagaaaggcttaattatatgctcataaa |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11477546 |
agattatactaaccatcaagagtgttctatatggtgtgaagaaaattaaattaattatattggtt-attggcaagaaaggcttaattatatgctcataaa |
11477448 |
T |
|
| Q |
112 |
acgctttaacgtttcttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11477447 |
acgctttaacgtttcttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttcatgggaaaatagaactctgattcggc |
11477348 |
T |
|
| Q |
212 |
gtttcctgtgttccttagatcatattttttctgaattttgtaatttcatgttattgcacactgagttctgatggatgaaaagagctgtattcaaagaaaa |
311 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11477347 |
gtttcctgtgttcctcagatcatgttttttctgaattttataatttcatgttattgcacactgagttctgatggatgaaaagagctgtattgaaagaaaa |
11477248 |
T |
|
| Q |
312 |
aatgttgttgcataattatgagactagagagacaaagaagttctaggcatccttaatgccattagctaggtg |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11477247 |
aatgttgttgcataattatgagactagagagacaaagaagttctaggcatccttaatgccattagctaggtg |
11477176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 206
Target Start/End: Original strand, 56401904 - 56401989
Alignment:
| Q |
122 |
gtttcttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgttc-atgggaaaatagaactctgat |
206 |
Q |
| |
|
||||||| |||| ||||| |||||||||| ||||||||||||||||||| |||||||||||| | ||||||| |||||| |||| |
|
|
| T |
56401904 |
gtttcttttataattttcatcattttgatacttcttagttgcagctgaaaaatatgctttgttcaaggggaaaagagaactttgat |
56401989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 18905260 - 18905203
Alignment:
| Q |
127 |
ttctatagttttcttcattttgatgtttcttagttgcagctgaaatgtatgctttgtt |
184 |
Q |
| |
|
||||||| || ||| ||||||||| |||||||||||||||| || | ||||||||||| |
|
|
| T |
18905260 |
ttctataattctctccattttgatatttcttagttgcagctaaattttatgctttgtt |
18905203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University