View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6156_low_1 (Length: 397)
Name: NF6156_low_1
Description: NF6156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6156_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Original strand, 48595893 - 48596262
Alignment:
| Q |
12 |
agagaaagagcatatgtttgacaaagtggtgacacctagtgacgtagggaaactgaatcgacttgtgattccaaagcaacacgcagagaagtacttccct |
111 |
Q |
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| T |
48595893 |
agagaaagagcatatgtttgacaaagtggtgacacctagtgacgtagggaaactaaatcgacttgtgattccaaagcaacacgcagagaagtacttccct |
48595992 |
T |
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| Q |
112 |
ttggattcttctaccaacgagaaagggcttctcctaaattttgaagatcgaaatggtaagatgtggcggttcaggtattcttattggaacagtagccaga |
211 |
Q |
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| T |
48595993 |
ttggattcttctaccaacgagaaagggcttctcctaaattttgaagatcgaaatggtaagatgtggcggttcaggtattcttattggaacagtagccaga |
48596092 |
T |
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| Q |
212 |
gttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaaacttgatgctggtgacattgtatcattccaccgtggacgtgctgaattgcacag |
311 |
Q |
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| T |
48596093 |
gttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaaacttgatgctggtgacattgtatcattccaccgtggacgtgctgaattgcacag |
48596192 |
T |
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| Q |
312 |
acacaggttgtacatagattggaggccaagggctcattctcagtactctcatcatcaccaccagtacctc |
381 |
Q |
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| T |
48596193 |
acacaggttgtacatagattggaggccaagggctcattctcagtactctcatcatcaccaccagtacctc |
48596262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 130 - 278
Target Start/End: Complemental strand, 8775157 - 8775009
Alignment:
| Q |
130 |
gagaaagggcttctcctaaattttgaagatcgaaatggtaagatgtggcggttcaggtattcttattggaacagtagccagagttatgtgatgacaaaag |
229 |
Q |
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| T |
8775157 |
gagaaaggtcttcttctgaattttgaagatagaaatggaaaattgtggagatttagatactcttattggaacagtagccaaagctatgttatgacaaaag |
8775058 |
T |
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| Q |
230 |
gttggagccgtttcgttaaggagaagaaacttgatgctggtgacattgt |
278 |
Q |
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| T |
8775057 |
gttggagccgttttgttaaagagaaaaaacttgatgctggcgacattgt |
8775009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 257
Target Start/End: Complemental strand, 41952166 - 41952096
Alignment:
| Q |
187 |
tattcttattggaacagtagccagagttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaa |
257 |
Q |
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| T |
41952166 |
tattcttattggaatagtagccagagttatgttttgaccaaaggatggagccggttcgttaaggagaagaa |
41952096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 257
Target Start/End: Original strand, 22190360 - 22190427
Alignment:
| Q |
190 |
tcttattggaacagtagccagagttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaa |
257 |
Q |
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| T |
22190360 |
tcttattggaacagtagtcaaagttacgttctaacaaaaggatggagccggttcgttaaggagaagaa |
22190427 |
T |
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