View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6157_high_1 (Length: 857)

Name: NF6157_high_1
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6157_high_1
NF6157_high_1
[»] chr8 (14 HSPs)
chr8 (461-845)||(35388563-35388948)
chr8 (24-346)||(35389179-35389501)
chr8 (368-462)||(35389088-35389182)
chr8 (700-805)||(35392333-35392438)
chr8 (700-805)||(35403103-35403208)
chr8 (23-83)||(43377331-43377391)
chr8 (27-83)||(2147039-2147095)
chr8 (23-83)||(18441520-18441580)
chr8 (23-83)||(39751008-39751068)
chr8 (23-83)||(41250150-41250210)
chr8 (33-83)||(34503147-34503197)
chr8 (26-83)||(5300681-5300738)
chr8 (26-83)||(34823098-34823155)
chr8 (26-83)||(39753079-39753136)
[»] chr6 (4 HSPs)
chr6 (23-83)||(29286163-29286223)
chr6 (26-83)||(7361125-7361182)
chr6 (19-83)||(25141154-25141218)
chr6 (26-83)||(2052665-2052721)
[»] chr4 (6 HSPs)
chr4 (27-83)||(4980000-4980056)
chr4 (23-83)||(6280791-6280851)
chr4 (92-141)||(33051562-33051611)
chr4 (23-83)||(44051171-44051231)
chr4 (34-83)||(28320493-28320542)
chr4 (38-83)||(46097041-46097086)
[»] chr3 (10 HSPs)
chr3 (23-83)||(55267375-55267435)
chr3 (23-83)||(6489267-6489327)
chr3 (26-83)||(32060294-32060351)
chr3 (26-83)||(55205271-55205328)
chr3 (27-83)||(7837526-7837582)
chr3 (23-83)||(19454404-19454464)
chr3 (25-83)||(41805756-41805814)
chr3 (38-83)||(2433037-2433082)
chr3 (26-83)||(6506033-6506090)
chr3 (23-80)||(55385074-55385131)
[»] chr1 (7 HSPs)
chr1 (23-83)||(49924790-49924850)
chr1 (33-83)||(49874942-49874992)
chr1 (33-83)||(9618656-9618706)
chr1 (25-83)||(11183120-11183178)
chr1 (23-80)||(1656163-1656220)
chr1 (38-83)||(1872042-1872087)
chr1 (23-80)||(19053996-19054053)
[»] chr7 (8 HSPs)
chr7 (24-83)||(34623460-34623519)
chr7 (92-141)||(42808614-42808663)
chr7 (23-83)||(28980252-28980312)
chr7 (23-83)||(34622433-34622493)
chr7 (23-83)||(46863423-46863483)
chr7 (33-83)||(35839324-35839374)
chr7 (23-80)||(28112779-28112836)
chr7 (54-83)||(48314608-48314637)
[»] scaffold0192 (1 HSPs)
scaffold0192 (26-83)||(25886-25943)
[»] scaffold0169 (1 HSPs)
scaffold0169 (23-83)||(1724-1784)
[»] chr2 (12 HSPs)
chr2 (23-83)||(35493420-35493480)
chr2 (23-83)||(25184908-25184968)
chr2 (24-83)||(16580479-16580538)
chr2 (24-83)||(41497406-41497465)
chr2 (23-80)||(28342460-28342517)
chr2 (25-82)||(41004464-41004521)
chr2 (27-83)||(24607651-24607707)
chr2 (23-83)||(41181371-41181431)
chr2 (24-83)||(41053748-41053807)
chr2 (23-80)||(435280-435337)
chr2 (54-83)||(15488252-15488281)
chr2 (26-83)||(41052615-41052672)
[»] scaffold0219 (1 HSPs)
scaffold0219 (27-83)||(20196-20252)
[»] chr5 (7 HSPs)
chr5 (23-83)||(7796595-7796655)
chr5 (27-83)||(25877556-25877612)
chr5 (23-83)||(31094497-31094557)
chr5 (24-83)||(18310101-18310160)
chr5 (33-83)||(8680331-8680381)
chr5 (38-83)||(26366822-26366867)
chr5 (23-72)||(33993225-33993274)
[»] scaffold0340 (1 HSPs)
scaffold0340 (26-83)||(1262-1319)


Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 461 - 845
Target Start/End: Complemental strand, 35388948 - 35388563
Alignment:
Q  461 tacacacatacttatgatatatagagcaaaataaacgaa-gcaaaacaacctcatcataattaagaagcaacattccatcactccctttgatattccttc 559  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35388948 tacacacatacttatgatatatagagcaaaataaacgaaagcaaaacaacctcatcataattaagaagcaacattccatcactccctttgatattccttc 35388849  T
Q  560 aatggccacatcaaagctgatttcagttatgttaatgttaacctttgcaacaaccattattttgataaatgtggtgattgtaggaggaaagaaaacatgg 659  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35388848 aatggccacatcaaagctgatttcagttatgttaatgttaacctttgcaacaaccattattttgataaatgtggtgattgtaggaggaaagaaaacatgg 35388749  T
Q  660 tgtgtttctaggagtgaagcaggtacccaacaactgattgatgctttaaattatgcatgtggagctggtgctgattgcggtcctattcaacctggtggaa 759  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35388748 tgtgtttctaggagtgaagcaggtacccaacaactgcttgatgctttaaattatgcatgtggagctggtgctgattgcggtcctattcaacctggtggaa 35388649  T
Q  760 gttgttattatccaaacacacttcaaaatcatgcttcctatgctttcaatagctattatcagaaagctcgtggctcttgtgatttt 845  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35388648 gttgttattatccaaacacacttcaaaatcatgcttcctatgctttcaatagctattatcagaaagctcgtggctcttgtgatttt 35388563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 24 - 346
Target Start/End: Complemental strand, 35389501 - 35389179
Alignment:
Q  24 ggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctcnnnnnnnctttctagtttgcagcattaaaacttgtgaccc 123  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||       ||||||||||||||||||||||||| |||| ||    
T  35389501 ggcaaaaacgtaaattactcgtatgtctcagccttatgcaatgtgtcaacaacaattctctttttttctttctagtttgcagcattaaaactggtgaacc 35389402  T
Q  124 tcaaattaattttctattcaattgctgtgattcacgtttgcttcatgtatatatgtatataaatataaatgtaataactcgtaatgatgaattgctaaac 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35389401 tcaaattaattttctattcaattgctgtgattcacgtttgcttcatgtatatatgtatataaatataaatgtaataactcgtaatgatgaattgctaaac 35389302  T
Q  224 ttgtgacaaggttactattatagactgatagtgcatacaaccattgttcattttctactatatttaactatgagatataatttgctataaattggatcac 323  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35389301 ttgtgacaaggttacaattatagactgatagtgcatacaaccattgttcattttctactatatttaactatgagatataatttgctataaattggaccac 35389202  T
Q  324 caaaaagaaaatatttgctttta 346  Q
    |||||||||||||||||||||||    
T  35389201 caaaaagaaaatatttgctttta 35389179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 368 - 462
Target Start/End: Complemental strand, 35389182 - 35389088
Alignment:
Q  368 tttacttacatctgagtaagacttagacatgaatcataattattttttccgaaagcgacatatttgagacggagggagtattgcatatttattta 462  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  35389182 tttacttgcatctgagtaagacttagacatgaatcataattattttttccgaaagcgacatatttgagacggaggaagtattgcatatttattta 35389088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 700 - 805
Target Start/End: Complemental strand, 35392438 - 35392333
Alignment:
Q  700 atgctttaaattatgcatgtggagctggtgctgattgcggtcctattcaacctggtggaagttgttattatccaaacacacttcaaaatcatgcttccta 799  Q
    ||||||||||||||||||||  |  ||| |||||||| || |||||||| ||||||||||| || | | |||||||||||||||||| ||||||||| ||    
T  35392438 atgctttaaattatgcatgttcaaatggagctgattgtggacctattcagcctggtggaagctgctttaatccaaacacacttcaaagtcatgcttcata 35392339  T
Q  800 tgcttt 805  Q
    ||||||    
T  35392338 tgcttt 35392333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 700 - 805
Target Start/End: Complemental strand, 35403208 - 35403103
Alignment:
Q  700 atgctttaaattatgcatgtggagctggtgctgattgcggtcctattcaacctggtggaagttgttattatccaaacacacttcaaaatcatgcttccta 799  Q
    ||||||||||||||||||||  |  ||| |||||||| || |||||||| ||||||||||| || | | |||||||||||||||||| ||||||||| ||    
T  35403208 atgctttaaattatgcatgttcaaatggagctgattgtggacctattcagcctggtggaagctgctttaatccaaacacacttcaaagtcatgcttcata 35403109  T
Q  800 tgcttt 805  Q
    ||||||    
T  35403108 tgcttt 35403103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 43377331 - 43377391
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||||||||| || |||  |||||||||| ||||||||||||||||||    
T  43377331 gggcaaaaacgtaaattactcgtgtgcctcagccttatgcaacgtgtcaacaacaattctc 43377391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 2147039 - 2147095
Alignment:
Q  27 aaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||| ||||||||||| || ||| ||||||| ||||||||||||||||||||||    
T  2147039 aaaaacgaaaattactcgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 2147095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 18441520 - 18441580
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||  ||||| || ||||||  ||||||| |||||||||||||||||||||    
T  18441520 gggcaaaaacgtattttacttgtgtgtctcagccttatgaaatgtgtcaacaacaattctc 18441580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 39751068 - 39751008
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||  |||||||| || ||| || |||||||||||||||||| ||||||||    
T  39751068 gggcaaaaacgtattttactcgtgtgcctcaacattatgcaatgtgtcaacagcaattctc 39751008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 41250150 - 41250210
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||| |||||||||| || | | |||||||||||||||  |||||||||||||    
T  41250150 gggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgtgggaacaacaattctc 41250210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 34503147 - 34503197
Alignment:
Q  33 gtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||| || | |  |||||||||||||||||||||||||||||    
T  34503147 gtaaattactcgtgtgacacacccttatgcaatgtgtcaacaacaattctc 34503197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 5300738 - 5300681
Alignment:
Q  26 caaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||  |||||||| | |||| |||||||  |||||||||||||||||||||    
T  5300738 caaaaacgtattttactcgtgtttctcaaccttatcaaatgtgtcaacaacaattctc 5300681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 34823098 - 34823155
Alignment:
Q  26 caaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||| |||||  || || ||| ||||||| ||||||||||||||||||||||    
T  34823098 caaaaacgtatattacgtgtgtgcctcaaccttatacaatgtgtcaacaacaattctc 34823155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 39753079 - 39753136
Alignment:
Q  26 caaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||| ||||||||||||| || ||   |||||| ||||||||||||||||||||||    
T  39753079 caaaaatgtaaattactcgtgtgcctgagccttatacaatgtgtcaacaacaattctc 39753136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 29286223 - 29286163
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||||| || || ||| ||||||||||||||||||||||||||||||    
T  29286223 gggcaaaaacgtaaattacttgtgtgcctcaaccttatgcaatgtgtcaacaacaattctc 29286163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 7361182 - 7361125
Alignment:
Q  26 caaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||||| || | |  |||||||||||||||||||| ||||||||    
T  7361182 caaaaacgtaaattactcgtgtgccacagccttatgcaatgtgtcaacagcaattctc 7361125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 25141154 - 25141218
Alignment:
Q  19 gaatgggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||| ||||||  ||||||| |||| || |||  |||||||||||||||||||||||||||||    
T  25141154 gaatggacaaaaatataaattattcgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 25141218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 2052665 - 2052721
Alignment:
Q  26 caaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||||| || || || ||||| ||||||| ||||||||||||||    
T  2052665 caaaaacgtaaattactcgtgtgcct-cagcttatacaatgtgccaacaacaattctc 2052721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 4980000 - 4980056
Alignment:
Q  27 aaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||    
T  4980000 aaaaacgtaaattactcgtgtgcctcaaccttatgcaatgtgtcaacaacaattctc 4980056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 6280851 - 6280791
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||||||||| || | | ||||||||||||||||||||||||||||||    
T  6280851 gggcaaaaacgtaaattactcgtgtgccccaaccttatgcaatgtgtcaacaacaattctc 6280791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 33051611 - 33051562
Alignment:
Q  92 tttctagtttgcagcattaaaacttgtgaccctcaaattaattttctatt 141  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  33051611 tttctagtttgcagcaataaaacttgtgaccctcacattaattttctatt 33051562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 44051171 - 44051231
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||||| || || |||  |||||||||||||||||||||||||||||    
T  44051171 gggcaaaaacgtaaattactggtgtgcctcagccttatgcaatgtgtcaacaacaattctc 44051231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 28320542 - 28320493
Alignment:
Q  34 taaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||| || | | ||||||||||||||||||||||||||||||    
T  28320542 taaattactcgtgtgacacaaccttatgcaatgtgtcaacaacaattctc 28320493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 46097041 - 46097086
Alignment:
Q  38 ttactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||| ||||||  ||||||||||||| |||||||||||||||    
T  46097041 ttactcgtgtgtctcagccttatgcaatgtatcaacaacaattctc 46097086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 55267435 - 55267375
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||||||||| ||||||  |||||||||| ||||||||||||||||||    
T  55267435 gggcaaaaacgtaaattactcgtgtgtctcagccttatgcaacgtgtcaacaacaattctc 55267375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 6489327 - 6489267
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||||| || || ||| ||||||||||||||||||||| ||||||||    
T  6489327 gggcaaaaacgtaaattacttgtgtgcctcaaccttatgcaatgtgtcaacagcaattctc 6489267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 32060294 - 32060351
Alignment:
Q  26 caaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||||||||| |||  ||||||||||||||| || ||||||||||    
T  32060294 caaaaacgtaaattactcgtatgcctcagccttatgcaatgtgttaaaaacaattctc 32060351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 55205328 - 55205271
Alignment:
Q  26 caaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||| |||| |||  |||||||||||||||||||| ||||||||    
T  55205328 caaaaacgtaaattactcatatgcctcagccttatgcaatgtgtcaacatcaattctc 55205271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 7837582 - 7837526
Alignment:
Q  27 aaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||| ||||||||| || ||||||  |||||||||||||||||||||||||||||    
T  7837582 aaaaacttaaattacttgtgtgtctcagccttatgcaatgtgtcaacaacaattctc 7837526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 19454404 - 19454464
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||| ||||  |||||||| |||||| |||||||||||||| |||||||||||||||    
T  19454404 gggcaaaagcgtattttactcgtgtgtctcaaccttatgcaatgtatcaacaacaattctc 19454464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 41805756 - 41805814
Alignment:
Q  25 gcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||| || || |||  ||||||||||||||||| |||||||||||    
T  41805756 gcaaaaacgtaaattacttgtgtgcctcagccttatgcaatgtgtcatcaacaattctc 41805814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Original strand, 2433037 - 2433082
Alignment:
Q  38 ttactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||| || |||  |||||||||||||||||||||||||||||    
T  2433037 ttactcgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 2433082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 6506033 - 6506090
Alignment:
Q  26 caaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||||| || |||  |||||| |||||||||||||  |||||||    
T  6506033 caaaaacgtaaattactcgtgtgcctcagccttatacaatgtgtcaacagtaattctc 6506090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 55385131 - 55385074
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaatt 80  Q
    |||||||||||| |||||||||| || | | |||||||||||||||  ||||||||||    
T  55385131 gggcaaaaacgtcaattactcgtgtgccacaaccttatgcaatgtgggaacaacaatt 55385074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 3e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 49924850 - 49924790
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||||||||| || |||  |||||||||||||||||||||||||||||    
T  49924850 gggcaaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 49924790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 49874992 - 49874942
Alignment:
Q  33 gtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||| || | | ||||||||||||||||||||||||||||||    
T  49874992 gtaaattactcgtgtgacacaaccttatgcaatgtgtcaacaacaattctc 49874942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 9618706 - 9618656
Alignment:
Q  33 gtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||| || | |  |||||||||||||||||||||||||||||    
T  9618706 gtaaattactcgtgtgacacagccttatgcaatgtgtcaacaacaattctc 9618656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 11183178 - 11183120
Alignment:
Q  25 gcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||  |||||||||| ||||  ||||||  |||||||||||||||||||||    
T  11183178 gcaaaaacgtattttactcgtatttctcagccttatcaaatgtgtcaacaacaattctc 11183120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 1656163 - 1656220
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaatt 80  Q
    |||||||||| ||  |||||||| | |||| |||||||| ||||||||||||||||||    
T  1656163 gggcaaaaacatattttactcgtgtttctcaaccttatgaaatgtgtcaacaacaatt 1656220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 1872087 - 1872042
Alignment:
Q  38 ttactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||| || |||  |||||||||||||||||||||||||||||    
T  1872087 ttactcgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 1872042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 19054053 - 19053996
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaatt 80  Q
    |||||||||||||  |||||||| | ||||  ||||||| ||||||||||||||||||    
T  19054053 gggcaaaaacgtattttactcgtgtttctcagccttatgaaatgtgtcaacaacaatt 19053996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 34623460 - 34623519
Alignment:
Q  24 ggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||||    
T  34623460 ggcaaaaacgtaaattactcgtgtgtctcaaccttatgcaatatgtcaacagcaattctc 34623519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 42808663 - 42808614
Alignment:
Q  92 tttctagtttgcagcattaaaacttgtgaccctcaaattaattttctatt 141  Q
    |||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  42808663 tttctagtttgcagcaataaaacttgtgaccctcacattaattttctatt 42808614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 28980252 - 28980312
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||  |||||||| ||||||  |||||||||||||||||||||||||||||    
T  28980252 gggcaaaaacgtattttactcgtgtgtctcagccttatgcaatgtgtcaacaacaattctc 28980312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 34622493 - 34622433
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||||| || || |||  |||||||||||||||||||||||||||||    
T  34622493 gggcaaaaacgtaaattacttgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 34622433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 46863423 - 46863483
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||  ||||| || ||||||  |||||||||||| ||||||||||||||||    
T  46863423 gggcaaaaacgtattttacttgtgtgtctcagccttatgcaatgcgtcaacaacaattctc 46863483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 35839374 - 35839324
Alignment:
Q  33 gtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||| || || | | ||||||||||||||||||||||||||||||    
T  35839374 gtaaattactagtgtgacacaaccttatgcaatgtgtcaacaacaattctc 35839324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 28112836 - 28112779
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaatt 80  Q
    |||||||| ||||  ||||| || |||||| |||||||| ||||||||||||||||||    
T  28112836 gggcaaaagcgtattttacttgtgtgtctcaaccttatgaaatgtgtcaacaacaatt 28112779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 83
Target Start/End: Complemental strand, 48314637 - 48314608
Alignment:
Q  54 accttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||||||||||||||||    
T  48314637 accttatgcaatgtgtcaacaacaattctc 48314608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 25943 - 25886
Alignment:
Q  26 caaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||| ||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  25943 caaaaacataaattactcgtatgcctcagccttatgcaatgtgtcaacaacaattctc 25886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 1724 - 1784
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||||||||| || |||  |||||||||||||||||||| ||||||||    
T  1724 gggcaaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtcaacatcaattctc 1784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 35493420 - 35493480
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||| ||||  |||||||| |||||| ||||||||||||||||||||||||||||||    
T  35493420 gggcaaaagcgtattttactcgtgtgtctcaaccttatgcaatgtgtcaacaacaattctc 35493480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Original strand, 25184908 - 25184968
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||  |||||||| || ||| |||||||||||| |||||||||||||||||    
T  25184908 gggcaaaaacgtattttactcgtgtgcctcaaccttatgcaatctgtcaacaacaattctc 25184968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 16580538 - 16580479
Alignment:
Q  24 ggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||| |||  |||||||| ||||||  |||||||||||||||||||||||||||||    
T  16580538 ggcaaaaatgtattttactcgtgtgtctcagccttatgcaatgtgtcaacaacaattctc 16580479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 83
Target Start/End: Complemental strand, 41497465 - 41497406
Alignment:
Q  24 ggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||||||| || |||  |||||||||||||||||| | ||||||||    
T  41497465 ggcaaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtcaagagcaattctc 41497406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 28342517 - 28342460
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaatt 80  Q
    ||||||||||||||||||||  | |||||   ||||||||||||||||||||||||||    
T  28342517 gggcaaaaacgtaaattacttatgtgtcttagccttatgcaatgtgtcaacaacaatt 28342460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 41004521 - 41004464
Alignment:
Q  25 gcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattct 82  Q
    ||||||||||||||||||||||||  ||  |||||| ||||||||||||||| |||||    
T  41004521 gcaaaaacgtaaattactcgtatgcatcagccttatacaatgtgtcaacaacgattct 41004464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 24607651 - 24607707
Alignment:
Q  27 aaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||  || || |||  |||||||||||||||||||||||||||||    
T  24607651 aaaaacgtaaattacctgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 24607707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 41181431 - 41181371
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||  |||||||| || |||  |||||||||||||||||||| ||||||||    
T  41181431 gggcaaaaacgtattttactcgtgtgcctcagccttatgcaatgtgtcaacatcaattctc 41181371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 41053748 - 41053807
Alignment:
Q  24 ggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||||||  || |||  ||||||| |||||||||||| ||||||||    
T  41053748 ggcaaaaacgtaaattactcgcgtgcctcagccttatgtaatgtgtcaacagcaattctc 41053807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 435337 - 435280
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaatt 80  Q
    ||||||||||||||||||||||| || |||   ||||| || ||||||||||||||||    
T  435337 gggcaaaaacgtaaattactcgtgtgcctcagtcttatacagtgtgtcaacaacaatt 435280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 83
Target Start/End: Original strand, 15488252 - 15488281
Alignment:
Q  54 accttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||||||||||||||||    
T  15488252 accttatgcaatgtgtcaacaacaattctc 15488281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 41052672 - 41052615
Alignment:
Q  26 caaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||| || ||  ||  ||||||||||| |||||||||||||||||    
T  41052672 caaaaacgtaaattacttgtgtgcatcagccttatgcaatatgtcaacaacaattctc 41052615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 20196 - 20252
Alignment:
Q  27 aaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||||| ||||||  ||||||||||||||| |||| ||||||||    
T  20196 aaaaacgtaaattactcgtgtgtctcagccttatgcaatgtgtaaacatcaattctc 20252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 7796655 - 7796595
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||||||||||||| || |||  ||| |||||||||||||||| ||||||||    
T  7796655 gggcaaaaacgtaaattactcgtgtgcctcagcctaatgcaatgtgtcaacatcaattctc 7796595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 25877612 - 25877556
Alignment:
Q  27 aaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||  |||||||| || | | ||||||||||||||||||||||||||||||    
T  25877612 aaaaacgtattttactcgtgtgacacaaccttatgcaatgtgtcaacaacaattctc 25877556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 31094557 - 31094497
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||| ||||||||||||| || ||   ||||||||||||| |||||||||||||||    
T  31094557 gggcaaaaatgtaaattactcgtgtgcctaagccttatgcaatgtatcaacaacaattctc 31094497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 18310101 - 18310160
Alignment:
Q  24 ggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||  ||||| || || |||  |||||||||||||||||||||||||||||    
T  18310101 ggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaacaacaattctc 18310160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 8680331 - 8680381
Alignment:
Q  33 gtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    ||||||||||||| || | |  |||||||||||||||||||||||||||||    
T  8680331 gtaaattactcgtgtgacacagccttatgcaatgtgtcaacaacaattctc 8680381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 26366867 - 26366822
Alignment:
Q  38 ttactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||| ||||||  ||||||||||||| |||||||||||||||    
T  26366867 ttactcgtgtgtctcagccttatgcaatgtatcaacaacaattctc 26366822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 33993274 - 33993225
Alignment:
Q  23 gggcaaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaa 72  Q
    |||||||||||||  |||||||||| |||| |||||||| ||||||||||    
T  33993274 gggcaaaaacgtattttactcgtatttctcaaccttatgaaatgtgtcaa 33993225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0340 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 83
Target Start/End: Original strand, 1262 - 1319
Alignment:
Q  26 caaaaacgtaaattactcgtatgtctccaccttatgcaatgtgtcaacaacaattctc 83  Q
    |||||||||||||||||||| || |||  ||||||||||||||||| || ||||||||    
T  1262 caaaaacgtaaattactcgtgtgcctcagccttatgcaatgtgtcagcagcaattctc 1319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University