View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_high_13 (Length: 387)
Name: NF6157_high_13
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 369
Target Start/End: Complemental strand, 37999488 - 37999129
Alignment:
| Q |
11 |
cacagacacctgatccaaattaagcaatttatttgatttagaaaaaa-ttctaaaacaagataagatagtatttgaccttttatgttgtaatcaaattca |
109 |
Q |
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| T |
37999488 |
cacagacacctgatccaaattaagcaatttatttgatttagaaaaaaattctaaaacaagataagatagtatttgaccttttatgttgtaatcaaattca |
37999389 |
T |
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| Q |
110 |
atgtctttgacttgacccctcattcattaacattgctcccacatatttttagtcctaataattgtgtttaacattgctccgacaacaaaatattttggga |
209 |
Q |
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| T |
37999388 |
atgtctttgacttgacccctcattcattaacattgctcccacatatttttagtcctaataattatgtttaacattgctccgacaacaaaatattttggga |
37999289 |
T |
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| Q |
210 |
cactttctgcacgagttttccaacacgtgtagaacaagtgtcacatgagtgtctgatatgcgacaggcctgatattaaaaggtgtttgtgcttcatagtt |
309 |
Q |
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| T |
37999288 |
cactttctgcacgagttttccaacacgtgtagaacaagtgtcacatgagtgtctgatatgcgacaggcctgatattaaaaggtgtttgtgcttcatagtt |
37999189 |
T |
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| Q |
310 |
atctacttctagtgttaccttgattttgcatctgactagggatagcagtgagactgtatt |
369 |
Q |
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| T |
37999188 |
atctacttctagtgttaccttgattttgcatctgactagggatagcagtgagactgtatt |
37999129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 90
Target Start/End: Complemental strand, 44650109 - 44650046
Alignment:
| Q |
27 |
aaattaagcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
90 |
Q |
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| T |
44650109 |
aaattgagcaatttatttcattgaaaaaaaattataaaacaagataccatagaatttgaccttt |
44650046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 4748215 - 4748159
Alignment:
| Q |
33 |
agcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
90 |
Q |
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| T |
4748215 |
agcaatttatttcattg-gaaaaagttctaaaacaagttacgatagtatttgaccttt |
4748159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 9929658 - 9929714
Alignment:
| Q |
33 |
agcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
90 |
Q |
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| T |
9929658 |
agcaatttatttcatt-agaaaaagttctacaacaagatatcatagtatttgaccttt |
9929714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 16661312 - 16661256
Alignment:
| Q |
33 |
agcaatttatttgatttagaaaaaattctaaaacaagataagatagtatttgaccttt |
90 |
Q |
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|||||||||||| ||| | ||||| ||||||||||||||| |||||||||| |||||| |
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| T |
16661312 |
agcaatttattttattaa-aaaaagttctaaaacaagataggatagtatttaaccttt |
16661256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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