View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6157_high_16 (Length: 367)

Name: NF6157_high_16
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6157_high_16
NF6157_high_16
[»] chr1 (12 HSPs)
chr1 (127-347)||(1868232-1868452)
chr1 (129-347)||(1842625-1842843)
chr1 (185-347)||(1856695-1856857)
chr1 (170-347)||(1816187-1816364)
chr1 (164-339)||(9218929-9219104)
chr1 (185-347)||(9118278-9118440)
chr1 (12-60)||(1842532-1842580)
chr1 (164-347)||(9156100-9156283)
chr1 (12-60)||(1868117-1868165)
chr1 (132-347)||(9162012-9162227)
chr1 (185-347)||(9170838-9171000)
chr1 (185-347)||(9200405-9200567)
[»] chr7 (1 HSPs)
chr7 (170-347)||(37567622-37567799)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 127 - 347
Target Start/End: Original strand, 1868232 - 1868452
Alignment:
Q  127 tgctaaaatattcacacaagatcagctaaacaaggcaaccaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaagga 226  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  1868232 tgctaaaatattcacacaagatcagctaaacaaggcaaccaaaaacttcgacgagaatttaatcattggcaaaggtggttttggtaccgttttcaaagga 1868331  T
Q  227 tttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaa 326  Q
     ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||    
T  1868332 cttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcgatcaattcattaatgaggtggttgttctctctcaaa 1868431  T
Q  327 taaatcataggaatgtggtca 347  Q
    |||||||||||||||| ||||    
T  1868432 taaatcataggaatgttgtca 1868452  T

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Target: chr1; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 129 - 347
Target Start/End: Original strand, 1842625 - 1842843
Alignment:
Q  129 ctaaaatattcacacaagatcagctaaacaaggcaaccaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatt 228  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1842625 ctaaaatattcacacaagatcagctaaacaaggccaccaaagactttgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatt 1842724  T
Q  229 tctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaata 328  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||    
T  1842725 tctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcaatcaattcattaatgaggtaattattctctctcaaata 1842824  T
Q  329 aatcataggaatgtggtca 347  Q
    |||||||||||||| ||||    
T  1842825 aatcataggaatgttgtca 1842843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 347
Target Start/End: Original strand, 1856695 - 1856857
Alignment:
Q  185 ttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagcc 284  Q
    |||||||| || ||||| ||||||||||| |||| ||||||    || |||||||| ||||||||||||||||||||||| |||| |||||| | |||||    
T  1856695 ttaatcataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagcc 1856794  T
Q  285 aaatcaatcaattcatcaatgaggtagttgttctctctcaaataaatcataggaatgtggtca 347  Q
    ||||  | |||||||| |||||||| | |||| |||||||||||||||| || ||||||||||    
T  1856795 aaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacagaaatgtggtca 1856857  T

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Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 347
Target Start/End: Complemental strand, 1816364 - 1816187
Alignment:
Q  170 aactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaa 269  Q
    |||||||| ||||  |||||||| || | ||| ||||||||||| |||||||||||    || |||||||| |||||||| |||||||||||||| ||||    
T  1816364 aactttgatgagagcttaatcataggtagaggaggttttggtacagttttcaaaggggaacttgatgataatagaattgtggctatcaaaaagtccaaaa 1816265  T
Q  270 taatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataaatcataggaatgtggtca 347  Q
     ||||||   |||||||||  | |||||||| || ||||| | |||| |||||||||||||||| |||||||||||||    
T  1816264 caatagacgaaagccaaattgaacaattcattaacgaggtggatgttgtctctcaaataaatcacaggaatgtggtca 1816187  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 339
Target Start/End: Complemental strand, 9219104 - 9218929
Alignment:
Q  164 accaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagt 263  Q
    ||||||||||  ||||| |  |||||||| || | ||| ||||||||||| |||||||||||| || |    ||||| | |||||| ||| |||||||||    
T  9219104 accaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgtcaaaaagt 9219005  T
Q  264 caaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataaatcataggaa 339  Q
    | |||||||||||   ||  || ||| | |||||||| ||||||||||||||||| || |||||||||||||||||    
T  9219004 ccaaaataatagacgcaaatcagatcgagcaattcattaatgaggtagttgttctgtcccaaataaatcataggaa 9218929  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 185 - 347
Target Start/End: Original strand, 9118278 - 9118440
Alignment:
Q  185 ttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagcc 284  Q
    ||||||||||| | ||| ||||| |||||  ||||||||||| || ||   ||||| ||||| || ||| |||||||||| | |||||||||   ||  |    
T  9118278 ttaatcattggaagaggaggtttcggtacaattttcaaaggagttttacccgataacagaatcgtggctgtcaaaaagtccagaataatagacgcaaatc 9118377  T
Q  285 aaatcaatcaattcatcaatgaggtagttgttctctctcaaataaatcataggaatgtggtca 347  Q
    ||||| | |||||||| |||||||||||| |||| || |||||||||||||||||||| ||||    
T  9118378 aaatcgagcaattcattaatgaggtagttattctgtcccaaataaatcataggaatgttgtca 9118440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 1842532 - 1842580
Alignment:
Q  12 tcatcaaaatgaaagagaaattctttgagcagaatggtggtttgatttt 60  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1842532 tcatcaaaatgaaagagaaattctttgagcagaatggtggtctgatttt 1842580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 164 - 347
Target Start/End: Complemental strand, 9156283 - 9156100
Alignment:
Q  164 accaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagt 263  Q
    ||||||||||  || || || ||||||||||||| ||| ||||||||||| |||||||||||| || ||   || || | ||| |||||| | ||||| |    
T  9156283 accaaaaactacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaaggagttttacccgacaacaaaatcgttgctgtaaaaaaat 9156184  T
Q  264 caaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataaatcataggaatgtggtca 347  Q
    ||||||||||||||  ||  |||||| | || || || |||||||||||||| || || ||||||||||| || ||||| ||||    
T  9156183 caaaaataatagatgcaaatcaaatcgagcagtttattaatgaggtagttgtcctatcccaaataaatcacagaaatgttgtca 9156100  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 1868117 - 1868165
Alignment:
Q  12 tcatcaaaatgaaagagaaattctttgagcagaatggtggtttgatttt 60  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  1868117 tcatcaaaatgaaagagaaattcttcgaacagaatggtggtttgatttt 1868165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 347
Target Start/End: Complemental strand, 9162227 - 9162012
Alignment:
Q  132 aaatattcacacaagatcagctaaacaaggcaaccaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttct 231  Q
    ||||||||||| ||||  | ||||| || || ||||||||||  || || |  |||||||| |||| ||| ||||||||||| |||||||||||| |  |    
T  9162227 aaatattcacagaagaggaactaaagaaagccaccaaaaactacgatgatagcttaatcatcggcagaggaggttttggtacagttttcaaaggagtctt 9162128  T
Q  232 agatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataaat 331  Q
    |   ||||| | ||| || ||| ||||||| || ||||||||||||  ||  |||||  | || ||||| || |||||||||||||| || |||||||||    
T  9162127 accagataacaaaatcgtcgctgtcaaaaaatccaaaataatagatgcaaatcaaattgagcagttcattaacgaggtagttgttctgtcccaaataaat 9162028  T
Q  332 cataggaatgtggtca 347  Q
    ||||| ||||| ||||    
T  9162027 catagaaatgttgtca 9162012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 9171000 - 9170838
Alignment:
Q  185 ttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagcc 284  Q
    ||||||||||||| ||| ||||||||||| |||| ||||||| || ||  ||| || | ||| || ||| | ||||| || |||||||| ||   ||  |    
T  9171000 ttaatcattggcagaggaggttttggtacagtttacaaaggagttttacctgacaacaaaatcgtcgctgtaaaaaaatccaaaataattgacgcaaatc 9170901  T
Q  285 aaatcaatcaattcatcaatgaggtagttgttctctctcaaataaatcataggaatgtggtca 347  Q
    ||||  | |||||||| |||||||||||||||||  | |||||||||||||||||||| ||||    
T  9170900 aaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtca 9170838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 347
Target Start/End: Complemental strand, 9200567 - 9200405
Alignment:
Q  185 ttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagcc 284  Q
    |||||||| || | ||| ||||||||||| |||| ||||||| || ||  |||||| | |||||| ||| | ||||| || |||||||| ||   ||  |    
T  9200567 ttaatcatcggtagaggaggttttggtacagtttacaaaggagttttacctgataacaaaattgtcgctgtaaaaaaatccaaaataattgacgcaaatc 9200468  T
Q  285 aaatcaatcaattcatcaatgaggtagttgttctctctcaaataaatcataggaatgtggtca 347  Q
    ||||  | |||||||| |||||||||||||||||  | |||||||||||||||||||| ||||    
T  9200467 aaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtca 9200405  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 170 - 347
Target Start/End: Original strand, 37567622 - 37567799
Alignment:
Q  170 aactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaa 269  Q
    |||||||| ||||| |||| ||| || | ||| ||||||||||| |||||||||||    ||||||||||| |||| ||||||||||||||| || ||||    
T  37567622 aactttgatgagaacttaaccataggtagaggaggttttggtacagttttcaaagggaaactagatgataatagaactgttgctatcaaaaaatccaaaa 37567721  T
Q  270 taatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataaatcataggaatgtggtca 347  Q
     |||||||  ||||||||   | |||||||| |||||||| |   || ||||||||||||||||||||||||||||||    
T  37567722 caatagatgaaagccaaaatgaacaattcattaatgaggtggacattgtctctcaaataaatcataggaatgtggtca 37567799  T

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