View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_high_18 (Length: 362)
Name: NF6157_high_18
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 94 - 355
Target Start/End: Complemental strand, 33965585 - 33965312
Alignment:
| Q |
94 |
ctatgcatcgatattaaaacaaacttcaacaattgaagcaaactacaaagaacgagaaaaacattaccttaccttcccaaaagaacaaacgatttgcaaa |
193 |
Q |
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| T |
33965585 |
ctatgcatcgatattaaaacaaacttcaacaattgaagcaaactacaaagaacgagaaaaacattaccttaccttcccaaaagaacaaacgatttgcaaa |
33965486 |
T |
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| Q |
194 |
cggaatgattcagataggattcgattggaacgagaaccagaagcaattgatcctttagggtttccagattctggttttgcgtgcgatttggctaac---- |
289 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
33965485 |
cggaatgattcagataggattcgattggaaggagaaccagaagcaattgatcctttagggtttccagattctggttttgcgagtgatttggctaacgagg |
33965386 |
T |
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| Q |
290 |
--------gatggaagggaacctcacttttagaaaatattagagaagaaataaaactttaggtgcttcatctca |
355 |
Q |
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| T |
33965385 |
gaaggaatgagggaagggaacctcacttttagaaaatattagagaagaaataaaactttaggtgcttcatctca |
33965312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 33965658 - 33965626
Alignment:
| Q |
18 |
agaactagcttccatcttcgaattaaataaaat |
50 |
Q |
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| T |
33965658 |
agaactagcttccatcttcgaataaaataaaat |
33965626 |
T |
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