View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6157_high_2 (Length: 724)
Name: NF6157_high_2
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 645; Significance: 0; HSPs: 19)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 17 - 709
Target Start/End: Complemental strand, 48179609 - 48178917
Alignment:
| Q |
17 |
cacagagaccacaagttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataat |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48179609 |
cacagagaccacaggttaaacggtgtacaataagcaaattttttgttttaggaaaaataacacgttgtacaataagcaagttactcaactagagaataat |
48179510 |
T |
|
| Q |
117 |
ctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48179509 |
ctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatc |
48179410 |
T |
|
| Q |
217 |
tcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccacaagtttgggttgttcaatgcataacagttt |
316 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48179409 |
tcctgaatacacactgcatactgcagataaaataccgatgacatacacagagtttctctcatatccccacaagtttgggttgttcaatgcataacagttt |
48179310 |
T |
|
| Q |
317 |
ctcccgaaaccatttgaaacataaaataatgcaatatttcccaaagtttctagtttgacataattcatggttgagaaatctatcttgtatacattcctta |
416 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48179309 |
ctctcgaaaccatttgaaacataaaataatgcaatgttgcccaaagtttctagtttgacataattcatggttgagaaatctatcttgtatacattcctta |
48179210 |
T |
|
| Q |
417 |
tttccccacacgttgaatcaaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttag |
516 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48179209 |
tttccccacatgttgaatcaaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttag |
48179110 |
T |
|
| Q |
517 |
aaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaaccctc |
616 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48179109 |
aaatttaatatttgcataattcaagtcgaggacccctatgttggcattgttagtgacaacatatattatattatgcaaaactacaaagtcaacaaccctc |
48179010 |
T |
|
| Q |
617 |
cccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgatagacatgcaaacgatattcgcataaaatcaacaagacaaat |
709 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48179009 |
cctgcatctctcgttgtcgaataagtaacccaaccacaatttcgagattgatagacatgcaaacgatattcgcataaaatcaacaagacaaat |
48178917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 74 - 669
Target Start/End: Complemental strand, 47874062 - 47873489
Alignment:
| Q |
74 |
taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat |
173 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||| ||||| |||| || |||||| || |||| |||||||| ||||| |||| ||||| || ||||| |
|
|
| T |
47874062 |
taacacgatgtacaatatgcaagttactcaactggagaaaaatcaacctcatatcgtagatgtctaaaacaacaatccaacatcagggaatgtgatccat |
47873963 |
T |
|
| Q |
174 |
gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttct |
273 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||| | |||| || || |||| ||||||||||||| || |
|
|
| T |
47873962 |
gaggagctggaagcgtaatgcatttttacaattttttatcatcccctgaatacactctacatagtgtagatgaagaactgatggcatacacagagttgct |
47873863 |
T |
|
| Q |
274 |
ctcatatccccacaagtttgggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttcccaaagtttctagtttg |
373 |
Q |
| |
|
||||||||| ||| ||| |||||| ||||||||||||||||| | || ||||||| |||||||||||| | |||| |||||||||||| |
|
|
| T |
47873862 |
ctcatatcctcacctgttcgggttgctcaatgcataacagtttgt---------gttcgaaacattaaataatgcaatgtcgcccagtgtttctagtttg |
47873772 |
T |
|
| Q |
374 |
acataattcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatcaaccactaaaagttgttcatcacaattaaccaaccttg |
473 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47873771 |
acataattcatggttgagaagtctatcttgtacacattc------------aaccttgaatcaaccactaaaagttgttcatcacagttaaccaaccaaa |
47873684 |
T |
|
| Q |
474 |
ggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaagga--cccctatgttggcatttttagtg |
571 |
Q |
| |
|
|||||||||| | | || ||| |||||||||| ||||||||||||||||||||| ||||||||| || | ||||||||||||| || | |||| |
|
|
| T |
47873683 |
agtataaggaa---gttttattgggaatactcttcagttttagaaatttaatatttgcagaattcaagctgagtacccccctatgttggccttgtcagtg |
47873587 |
T |
|
| Q |
572 |
acaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgata |
669 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| ||| || || || | ||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
47873586 |
acaacatatatcatattatgcaaaactacaaagtcaacaaccatccacggatttccctttgtcatataagtaacccaaccacaattttgagattgata |
47873489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 160 - 680
Target Start/End: Original strand, 49540497 - 49541008
Alignment:
| Q |
160 |
ggaacttgttccatgaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgaca |
259 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| ||||||| || ||||||||||| |||||||||||||| |||| | |||| || || ||||||| |
|
|
| T |
49540497 |
ggaacttgtttcatgaggagctggaattttaatgtatttttgaaactttttatcatcacctgaatacacactacatattgtagatccaagacggatgaca |
49540596 |
T |
|
| Q |
260 |
tacacagagtttctctcatatccccacaagtttgggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttccca |
359 |
Q |
| |
|
|||| |||||| ||||| |||||||| | |||||| ||||||||||||| |||| ||| |||| ||||||||||||||| | |||| |
|
|
| T |
49540597 |
tacatagagttgctctcgtatccccatctactcgggttgctcaatgcataacaacttct---------attcgaaatataaaataatgcaatgtcgccca |
49540687 |
T |
|
| Q |
360 |
aagtttctagtttgacataattcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatcaaccactaaaagttgttcatcaca |
459 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| ||||||||||| |||||||||||||| | ||||| ||||||||||||||||||| ||||| || |
|
|
| T |
49540688 |
aagtttcttgtttgacataatccatggttgagaagtctatcttgtacacattccttatttcactgtacgttaaatcaaccactaaaagttgctcatcgca |
49540787 |
T |
|
| Q |
460 |
attaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttg |
559 |
Q |
| |
|
|||||||||||| ||||||||||| | ||| ||||||||||||| || ||| |||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
49540788 |
attaaccaacctaaggtataaggaatttgtgacagcaggagtactctttagttttgaaaatttaatatttgcagaattcaagttgagtacccctatgttg |
49540887 |
T |
|
| Q |
560 |
gcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaatttt |
659 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||| ||||||| |||||||||||| | || | ||||||||||||||||||||| ||||||||| |
|
|
| T |
49540888 |
aacttgttagtgacaacatatattaaattatgcaaaaccacaaagttaacaaccctccctgaattttccgttgtcgaataagtaacccaaccacaatttc |
49540987 |
T |
|
| Q |
660 |
gagattgatagacatgcaaac |
680 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
49540988 |
aagattgatagacaagcaaac |
49541008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 160; E-Value: 7e-85
Query Start/End: Original strand, 75 - 680
Target Start/End: Complemental strand, 40141136 - 40140545
Alignment:
| Q |
75 |
aacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat- |
173 |
Q |
| |
|
|||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
40141136 |
aacacggtgtacaacatgcaagttactcaactagagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccata |
40141037 |
T |
|
| Q |
174 |
--gaagagctggaagcgtaatgcatttttgcaa-ttttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtt |
270 |
Q |
| |
|
|| ||||||||| ||| || |||||||| || |||||||||||| |||||||||||||||||| | | | | | | |||||||| ||||||||| |
|
|
| T |
40141036 |
aggaggagctggaaacgtgatacatttttgtaatttttttatcatcgcctgaatacacactgcattatgtatacagacgattgatgacatgcacagagtt |
40140937 |
T |
|
| Q |
271 |
tctctcatatccccacaagtttgggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttcccaaagtttctagt |
370 |
Q |
| |
|
|| |||||||||||| ||||||||| | ||||||||| ||||||| || | | ||| |||||||| ||| | |||||| |||| ||| |
|
|
| T |
40140936 |
gctttcatatccccacctatttgggttgcttaatgcataatagtttct---------gttagcagcatgaaataatgaaatgtcgcccaaactttccagt |
40140846 |
T |
|
| Q |
371 |
ttgacataattcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatcaaccactaaaagttgttcatcacaattaaccaacc |
470 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||| |||||||||||| |||||||| |||||||| || ||||| | |
|
|
| T |
40140845 |
ttgacataattcatggttgagaagtctatcttgtatacattccttgtttccttcaacgatgaatcaaccaccaaaagttgctcatcacagttgaccaatc |
40140746 |
T |
|
| Q |
471 |
ttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagt |
570 |
Q |
| |
|
| ||||| | || | ||| ||||||||| |||||||||||||||| |||| ||||||||| ||| |||||||||||||| || | ||| |
|
|
| T |
40140745 |
taaggtat---------cggacgttgggaacactcttcagttttagaaatttaatatctgcagaattcaagctaagtacccctatgttggccttgtcagt |
40140655 |
T |
|
| Q |
571 |
gacaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgatag |
670 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||||||||||||||| | | | | | |||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40140654 |
gacaacatatattatattatgtaaaaccataaagtcaacaaccctccctggtttttccactatcgaataagtaacccaaccacaattttgagattgatag |
40140555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 336 - 673
Target Start/End: Original strand, 2417956 - 2418294
Alignment:
| Q |
336 |
cataaaataatgcaatatttcccaaagtttctagtttgacataattcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatc |
435 |
Q |
| |
|
|||||||||||| ||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| |||||| |
|
|
| T |
2417956 |
cataaaataatgaaatgttgcccaaagtttccagtttgacataattcatggttgagaagcctatcttgtatacattccttatctccttcaacgatgaatc |
2418055 |
T |
|
| Q |
436 |
aaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataa |
535 |
Q |
| |
|
||||||||||||||| |||||||| |||| || || ||||| ||||| | ||| | ||| ||||||||| |||||||||||||||| |||| || |
|
|
| T |
2418056 |
aaccactaaaagttgctcatcacagttaattaatctaaggtatcaggaagttgttacgttgggaacactcttcagttttagaaatttaatatctgcagaa |
2418155 |
T |
|
| Q |
536 |
ttcaagccaaggacccc-tatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtc |
634 |
Q |
| |
|
||||||| || ||||| ||||||||| || | ||| ||||||||||||||||||||| |||| | |||||||||||||||||| | || || | ||||| |
|
|
| T |
2418156 |
ttcaagctgagtaccccctatgttggccttgtcagtaacaacatatattatattatgcgaaaccataaagtcaacaaccctccctggatttcccattgtc |
2418255 |
T |
|
| Q |
635 |
gaataagtaacccagccacaattttgagattgatagaca |
673 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2418256 |
gaataagtaacccaatcacaattttgagattgatagaca |
2418294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 85 - 680
Target Start/End: Complemental strand, 45196954 - 45196353
Alignment:
| Q |
85 |
acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga |
184 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||| |||| | ||||| ||| | |||||||| |
|
|
| T |
45196954 |
acaatatgcaagttacttaactagagaataatctatctcatattgttgatgtctaaaacaccaatcgaacatcaaacacattgttgcatcaggagctgga |
45196855 |
T |
|
| Q |
185 |
a------gcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcat |
278 |
Q |
| |
|
| | ||||||| |||||||||||||||||||| ||||||||| |||| |||| | |||||||| | |||| |||||| ||| || | ||||| |
|
|
| T |
45196854 |
actagaagtgtaatgcttttttgcaattttttatcattccctgaatacgcactacatattgtagataaaagattgatgtcatacatagaattgcactcat |
45196755 |
T |
|
| Q |
279 |
atccccacaagtttgggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttcccaaagtttctagtttgacata |
378 |
Q |
| |
|
||||||| || || ||| ||||||||||||| |||||| || | ||||| | || ||||||||||||| | |||||||||| ||| |||| || |
|
|
| T |
45196754 |
atccccatctattcggattgctcaatgcataacaatttctcttcaaccaatttgtaccacaaaataatgcaatgtcacccaaagttttcagtctgacgta |
45196655 |
T |
|
| Q |
379 |
attcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatcaaccactaaaagttgttcatcacaattaaccaaccttgggtat |
478 |
Q |
| |
|
|||||| |||||||| |||||||||| ||||| |||||||| || | ||||||||||||||||||| | ||||||||||||||| || |||| |
|
|
| T |
45196654 |
attcatagttgagaagcctatcttgtacacattacttatttcgttggacataaaatcaaccactaaaagttgcgcgtcacaattaaccaacattaggtac |
45196555 |
T |
|
| Q |
479 |
aaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacat |
578 |
Q |
| |
|
|||||| || | | |||||||| ||||| ||||||||||||| ||||||| |||| |||| || |||||||||||||| | || |||||||||| |
|
|
| T |
45196554 |
ggggaaaattttatagcgggagtacttttcagttttagaaatttaacatttgcagaatttaagctgagtacccctatgttggccatgttggtgacaacat |
45196455 |
T |
|
| Q |
579 |
atattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgatagacatgcaa |
678 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| | || | || || | ||| ||| | |||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
45196454 |
atattatattacgcaaaaccacaaagtcaacaatcatctttgaatttcccattgctgaacaggtaacccaatcacaatttcgagattgatagacatgcaa |
45196355 |
T |
|
| Q |
679 |
ac |
680 |
Q |
| |
|
|| |
|
|
| T |
45196354 |
ac |
45196353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 76 - 680
Target Start/End: Original strand, 49440278 - 49440882
Alignment:
| Q |
76 |
acacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatga |
175 |
Q |
| |
|
|||| |||| ||||| |||||||||| ||| ||||||||||||||||||| | || |||| ||||||||||||||| ||||| | | | ||| ||||| |
|
|
| T |
49440278 |
acacattgtgcaatatgcaagttactaaaccagagaataatctacttcatgtcgtagatgtctaaaacaccaatcgaacatggagaagcctgtatcatga |
49440377 |
T |
|
| Q |
176 |
agagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctct |
275 |
Q |
| |
|
|| ||||||||| ||| | ||||| |||||||||| || | |||||||| | ||| | |||||||| || ||||||||| ||||| || |||| |
|
|
| T |
49440378 |
ggatttggaagcgtgatgtacttttgtgattttttatcgtcccatgaatacatgatacatgttgtagataaaacactgatgacataaacagaattactct |
49440477 |
T |
|
| Q |
276 |
catatccccacaagtttgggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttcccaaagtttctagtttgac |
375 |
Q |
| |
|
|||||||||||| ||| || || |||||||||||||| || || | || |||||| ||| ||||||| ||||| | ||||||||||| | || ||| |
|
|
| T |
49440478 |
catatccccacatgttcggatttctcaatgcataacagcttttctccaacatatttgacacacaaaataacgcaatgtcacccaaagtttccaattcgac |
49440577 |
T |
|
| Q |
376 |
ataattcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatcaaccactaaaagttgttcatcacaattaaccaaccttggg |
475 |
Q |
| |
|
|||| |||| |||||||| ||||||||||| |||||||||| || | |||||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
49440578 |
ataagtcatagttgagaagtctatcttgtacgcattccttataaaattgaacttcatatcaaccactaaaagttgatcgtcacaattaaccaacctaagc |
49440677 |
T |
|
| Q |
476 |
tataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaa |
575 |
Q |
| |
|
||||||| | |||| | | |||||||||| |||||||||||||||||||| ||||||||| || ||||| |||||||| || | |||||| | |
|
|
| T |
49440678 |
cataaggacgttgtagcatcggaaatactcttcagttttagaaatttaatatttgctgaattcaagctgagtaccccaatgttggccttgtcagtgacta |
49440777 |
T |
|
| Q |
576 |
catatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgatagacatg |
675 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||| || | | |||| |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
49440778 |
catatattatattatgaaaaatcacaaagtcaacaaccctcccttgattttccattgtagaataagtaacccaaccacaattacgagattgatagacatg |
49440877 |
T |
|
| Q |
676 |
caaac |
680 |
Q |
| |
|
||||| |
|
|
| T |
49440878 |
caaac |
49440882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 82 - 459
Target Start/End: Complemental strand, 40027337 - 40026967
Alignment:
| Q |
82 |
tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagct |
181 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||| ||| || || || | |||||||| ||||| ||||| ||| |||||||||| ||||| |
|
|
| T |
40027337 |
tgtacaatatgcaagttactcaacaagagaataatctacctca-atcgtagaggtctaaaacatcaatccaacatgctagaaaatgttccatgaggagct |
40027239 |
T |
|
| Q |
182 |
ggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagata---aaataccgatgacatacacagagtttctctcat |
278 |
Q |
| |
|
||||||||||| |||||||| ||||||||| |||| |||||||||||||| ||| | | || ||| | |||||||||||||||||| ||||||| |
|
|
| T |
40027238 |
ggaagcgtaatacatttttgtaattttttaccatcccctgaatacacactacattgtgtatatgttgaaagattgatgacatacacagagttactctcat |
40027139 |
T |
|
| Q |
279 |
atccccacaagtttgggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttcccaaagtttctagtttgacata |
378 |
Q |
| |
|
|||||||| || |||||| ||||||| ||| |||||||| || | |||||||||||||||| || ||||||| ||| ||||||||||| |
|
|
| T |
40027138 |
atccccacctattagggttgctcaatgcgtaaaagtttctc---------ttcccagcataaaataatgcaatgttgcccaaagcttcgagtttgacata |
40027048 |
T |
|
| Q |
379 |
attcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatcaaccactaaaagttgttcatcaca |
459 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||| | |||| | |||||||||| |||||||| |||||||| |
|
|
| T |
40027047 |
attcatggttgagaagtctatcttgtatacattcctcattttcttgcacgataaatcaaccaccaaaagttgctcatcaca |
40026967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 259 - 681
Target Start/End: Complemental strand, 41186009 - 41185590
Alignment:
| Q |
259 |
atacacagagtttctctcatatccccacaagtttgggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttccc |
358 |
Q |
| |
|
|||||||||||| |||||||||||||| ||| |||||| ||||||||||||| ||| || |||||| | |||| | ||||||||||||| || ||| |
|
|
| T |
41186009 |
atacacagagttgctctcatatccccatttgttcgggttgctcaatgcataacaatttttcttcaaaccaatcgaaatagaaaataatgcaatgttgccc |
41185910 |
T |
|
| Q |
359 |
aaagtttctagtttgacataattcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatcaaccactaaaagttgttcatcac |
458 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||| ||||||||||| ||| || ||||| | || | ||| ||| ||||||||||| ||||||| |
|
|
| T |
41185909 |
aaagtttttagtctgacataattcatggttgagaagtctatcttgtacaca---attgtttccgtagacaataaataaactactaaaagttgctcatcac |
41185813 |
T |
|
| Q |
459 |
aattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgtt |
558 |
Q |
| |
|
|| |||||||| | | | | || | || | | |||||||| |||| || |||||||||||||||||| ||||||||| || |||||||| || |
|
|
| T |
41185812 |
aaataaccaacttaagaagcataggaattgctatagcgagagtactcctcagtttaagaaatttaatatttgcagaattcaagctcagtacccctatctt |
41185713 |
T |
|
| Q |
559 |
ggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattt |
658 |
Q |
| |
|
||| || ||||||| ||||||||||||| ||| ||||| |||||||||||||||| | | || | |||| |||||||||||||| ||||||||| |
|
|
| T |
41185712 |
ggccttgttagtgatgacatatattatatcatgtaaaaccacaaagtcaacaacccactctctattttctattgttgaataagtaacccatccacaattt |
41185613 |
T |
|
| Q |
659 |
tgagattgatagacatgcaaacg |
681 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
41185612 |
tgagattgatagacatgcaaacg |
41185590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 512 - 678
Target Start/End: Complemental strand, 40026961 - 40026796
Alignment:
| Q |
512 |
tttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaa |
611 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || |||||||||| ||| || | |||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
40026961 |
tttagaaatttaatatttgcagaattcaagctgagtacccctatgt-ggccttgtcagtgacaacatatattatattatgcaaaaccacaaagtcaacaa |
40026863 |
T |
|
| Q |
612 |
ccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgatagacatgcaa |
678 |
Q |
| |
|
||||||| || || | |||||||||||| |||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
40026862 |
ccctccctagatttcccattgtcgaataagcaacccaaccacaatttcgagattgatagacatgcaa |
40026796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 432 - 663
Target Start/End: Complemental strand, 37849898 - 37849667
Alignment:
| Q |
432 |
aatcaaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgc |
531 |
Q |
| |
|
||||||||||||||| |||||| ||||||| ||||||| | | ||| ||||| | |||||| |||||||||||||| |||||||||||||||||| | |
|
|
| T |
37849898 |
aatcaaccactaaaacttgttcgtcacaatcaaccaacttaagaggtaatgaaaatgttacatcgggagtactcttcagttttagaaatttaatattttc |
37849799 |
T |
|
| Q |
532 |
ataattcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgtt |
631 |
Q |
| |
|
| |||||| | ||| |||||||||||||| || |||||||||||| ||||||||||||||||||| |||||||||| |||||| | |||| | || |
|
|
| T |
37849798 |
aaaattcaggttaagtacccctatgttggccttgttagtgacaacaaatattatattatgcaaaaccacaaagtcaaacaccctctctcgatcttccttt |
37849699 |
T |
|
| Q |
632 |
gtcgaataagtaacccagccacaattttgaga |
663 |
Q |
| |
|
|| |||||||||||||| ||||||||| |||| |
|
|
| T |
37849698 |
gttgaataagtaacccaaccacaatttcgaga |
37849667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 85 - 682
Target Start/End: Complemental strand, 33860750 - 33860153
Alignment:
| Q |
85 |
acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga |
184 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||| ||||| || || |||| ||||||||| ||||| | ||||||||||||| || || || | |
|
|
| T |
33860750 |
acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa |
33860651 |
T |
|
| Q |
185 |
agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc |
284 |
Q |
| |
|
| |||||| ||||||||||| ||||||||||||| |||||||||||| ||| | | | || | ||||| |||||||||||| ||||||||||||| |
|
|
| T |
33860650 |
accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc |
33860551 |
T |
|
| Q |
285 |
acaagtttgggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttcccaaagtttctagtttgacataattcat |
384 |
Q |
| |
|
||| | | || ||| ||||| ||| ||| ||| || |||| || | | ||||||||| |||||| | |||||| ||| ||||| || |||||||| |
|
|
| T |
33860550 |
acaggctcggattgctcaatacatgacaatttgccctgaaattatcggcatcataaaatagtgcaatgtcgcccaaaattttcagtttaacgtaattcat |
33860451 |
T |
|
| Q |
385 |
ggttgagaaatctatcttgtatacattccttatttccccacacgttgaatcaaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaa |
484 |
Q |
| |
|
||||||| ||||||||| | || ||| |||||| | | | || || |||||| |||||||| |||||||| |||| | |||| ||| || || |
|
|
| T |
33860450 |
ggttgagccttctatcttgaacactttctttatttgtctatgccttacattaaccaccaaaagttgctcatcacatataacgagccttaggttatagtaa |
33860351 |
T |
|
| Q |
485 |
aagggtacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatatta |
584 |
Q |
| |
|
| | ||| |||||||| ||||| ||||||||||||||||||| | | | ||||| || |||||||||||||| || ||||||| ||||||| | |
|
|
| T |
33860350 |
taaatttcattgggagtactattcagttttagaaatttaatatttggagagtccaagctgagtacccctatgttggctttaagagtgacagcatatataa |
33860251 |
T |
|
| Q |
585 |
tattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgatagacatgcaaacga |
682 |
Q |
| |
|
|||| || ||||| ||||||||||| ||| ||| |||| || |||| | |||| |||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
33860250 |
tattttggaaaaccacaaagtcaaccaccacccctttatctttcattgttggataaaaaacccatccacaatttcgagattgatagacatgcaaacga |
33860153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 85 - 682
Target Start/End: Original strand, 33920173 - 33920770
Alignment:
| Q |
85 |
acaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctgga |
184 |
Q |
| |
|
|||||| ||| | |||||||||||||||||||||| ||||| || || |||| ||||||||| ||||| | ||||||||||||| || || || | |
|
|
| T |
33920173 |
acaatatgcaggctactcaactagagaataatctatttcattccgtagacatctaatacaccaatcaaacatgagagaacttgttccatcaacagttgaa |
33920272 |
T |
|
| Q |
185 |
agcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcccc |
284 |
Q |
| |
|
| |||||| ||||||||||| ||||||||||||| |||||||||||| ||| | | | || | ||||| |||||||||||| ||||||||||||| |
|
|
| T |
33920273 |
accgtaatacatttttgcaactttttatcatctcatgaatacacactacatcttgtaaaaaattgattgatgatatacacagagttgctctcatatcccc |
33920372 |
T |
|
| Q |
285 |
acaagtttgggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttcccaaagtttctagtttgacataattcat |
384 |
Q |
| |
|
||| | | || ||| ||||| ||| ||| ||| || |||| || | | ||||||||| |||||| | |||||| ||| ||||| || |||||||| |
|
|
| T |
33920373 |
acaggctcggattgctcaatacatgacaatttgccctgaaattatcggcatcataaaatagtgcaatgtcgcccaaaattttcagtttaacgtaattcat |
33920472 |
T |
|
| Q |
385 |
ggttgagaaatctatcttgtatacattccttatttccccacacgttgaatcaaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaa |
484 |
Q |
| |
|
||||||| ||||||||| | || ||| |||||| | | | || || |||||| |||||||| |||||||| |||| | |||| ||| || || |
|
|
| T |
33920473 |
ggttgagccttctatcttgaacactttctttatttgtctatgccttacattaaccaccaaaagttgctcatcacatataacgagccttaggttatagtaa |
33920572 |
T |
|
| Q |
485 |
aagggtacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatatta |
584 |
Q |
| |
|
| | ||| |||||||| ||||| ||||||||||||||||||| | | | ||||| || |||||||||||||| || ||||||| ||||||| | |
|
|
| T |
33920573 |
taaatttcattgggagtactattcagttttagaaatttaatatttggagagtccaagctgagtacccctatgttggctttaagagtgacagcatatataa |
33920672 |
T |
|
| Q |
585 |
tattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgatagacatgcaaacga |
682 |
Q |
| |
|
|||| || ||||| ||||||||||| ||| ||| |||| || |||| | |||| |||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
33920673 |
tattttggaaaaccacaaagtcaaccaccacccctttatctttcattgttggataaaaaacccatccacaatttcgagattgatagacatgcaaacga |
33920770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 2417749 - 2417886
Alignment:
| Q |
95 |
agttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat---gaagagctggaagcgtaa |
191 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||| |||| |||||||||||||| ||||||| ||| |||||||| || |||||||||||||| |
|
|
| T |
2417749 |
agttactcaactgaagaataatctacctcatattgtagatgtctaaaacaccaatccaacatgtgagaatctgttccatacggaggagctggaagcgtac |
2417848 |
T |
|
| Q |
192 |
tgcatttttgcaattttttatcatctcctgaatacaca |
229 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2417849 |
tacatttttgcaattttttatcatcccctgaatacaca |
2417886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 74 - 231
Target Start/End: Complemental strand, 49287567 - 49287413
Alignment:
| Q |
74 |
taacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccat |
173 |
Q |
| |
|
||||||| |||| |||| ||||| |||||||||| ||||||||||| ||||||||| |||| ||||| |||||||| |||||| |||| || | ||| |
|
|
| T |
49287567 |
taacacggtgtataatatccaagtcactcaactagggaataatctacctcatattgtagatgtctaaatcaccaatcaaacatgtaggaatgtgctgcat |
49287468 |
T |
|
| Q |
174 |
gaagagctggaagcgtaatgcatttttgcaattttttatcatctcctgaatacacact |
231 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||| || |||||||||| |
|
|
| T |
49287467 |
---gagctggaagcataatgcattttttcaattttttatcatccccgaaatacacact |
49287413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 94 - 229
Target Start/End: Complemental strand, 37847359 - 37847219
Alignment:
| Q |
94 |
aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg |
193 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| || ||| ||||| |||||||| || ||||| | ||||||||||| | | || ||||||||||| |
|
|
| T |
37847359 |
aagttactcaactagaaaataatctacttcatatcgtacatgtctaaatcaccaatcaaacttgtggaatcttgttccatggaaacctagaagcgtaatg |
37847260 |
T |
|
| Q |
194 |
cattttt-----gcaattttttatcatctcctgaatacaca |
229 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
37847259 |
catttttttttctcaatttgttatcatctcctgaatacaca |
37847219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 69 - 151
Target Start/End: Complemental strand, 41186210 - 41186128
Alignment:
| Q |
69 |
aaaaataacacgttgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcg |
151 |
Q |
| |
|
|||| |||||| ||||||||| |||||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||| |
|
|
| T |
41186210 |
aaaagtaacacaatgtacaatatgcaagttactcaactagaaaataatctatctcatattgtagatgcctaaaccaccaatcg |
41186128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 568 - 678
Target Start/End: Complemental strand, 49287121 - 49287012
Alignment:
| Q |
568 |
agtgacaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattga |
667 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||||| || | || | | |||| |||||||||||||| ||||||||| |||||||| |
|
|
| T |
49287121 |
agtgacaacatatattatattatgcaaaaccacat-gtcaacaactcttactttattttccattgttgaataagtaacccaaccacaatttcgagattga |
49287023 |
T |
|
| Q |
668 |
tagacatgcaa |
678 |
Q |
| |
|
||||||||||| |
|
|
| T |
49287022 |
tagacatgcaa |
49287012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 357 - 417
Target Start/End: Complemental strand, 49287289 - 49287229
Alignment:
| Q |
357 |
ccaaagtttctagtttgacataattcatggttgagaaatctatcttgtatacattccttat |
417 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||||||| ||||||||||| |||| |||||| |
|
|
| T |
49287289 |
ccaaagttttcagtttaacataactcatggttgagaagtctatcttgtacacatcccttat |
49287229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 15)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 83 - 709
Target Start/End: Complemental strand, 14964485 - 14963859
Alignment:
| Q |
83 |
gtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctg |
182 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||| | | |||||| ||| |||||| |
|
|
| T |
14964485 |
gtacaatatgcaaattactcaactagagaataatctacttcatattgtagatgtctaaaacaccaatctaccatcaagcaccttgttgcatctggagctg |
14964386 |
T |
|
| Q |
183 |
gaagcgtaatgcatttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatcc |
282 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| || ||||||||||| |||| | |||||||| || |||||||||||||||||| || |||||||| |
|
|
| T |
14964385 |
gaagcgtaatgcatttttgcaattgtttatcatccccagaatacacactacatattgtagataaaagactgatgacatacacagagttgctttcatatcc |
14964286 |
T |
|
| Q |
283 |
ccacaagtttgggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttcccaaagtttctagtttgacataattc |
382 |
Q |
| |
|
|||| |||||||||| ||||||||||||| |||||| |||||||| ||| || ||||||||||||| | ||||||||||| | ||| ||||||||| |
|
|
| T |
14964285 |
ccacttgtttgggttgctcaatgcataacaatttctcttcaaaccattcgaaccacaaaataatgcaatgtcgcccaaagtttccaatttcacataattc |
14964186 |
T |
|
| Q |
383 |
atggttgagaaatctatcttgtatacattccttatttccccacacgttgaatcaaccactaaaagttgttcatcacaattaaccaaccttgggtataagg |
482 |
Q |
| |
|
||||||||||| || |||||||| ||||||||||||||| | | ||||||||||||||||||| |||| |||||| |||||| | || || ||| |
|
|
| T |
14964185 |
atggttgagaagtcgatcttgtacacattccttatttccttgggcataaaatcaaccactaaaagttgctcattacaatttaccaacttaaggcatgagg |
14964086 |
T |
|
| Q |
483 |
aaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatat |
582 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |||||| |||||||| | |||||||||| ||| | ||||||| ||||||||| |
|
|
| T |
14964085 |
aaaagtttacatttggagtactcttcagctttagaaatttaacatttgctgaattcaagttgattacccctatgtaggccatgttagtgataacatatat |
14963986 |
T |
|
| Q |
583 |
tatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgatagacatgcaaacga |
682 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| | | || | |||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
14963985 |
tatattatgcaaaaccacaaagtcaacaaccctccctgagtttcccattgttgaataagtaacccaatcacaattttgagattgatagacatgcaaacga |
14963886 |
T |
|
| Q |
683 |
tattcgcataaaatcaacaagacaaat |
709 |
Q |
| |
|
|| |||||||| | |||||||||| |
|
|
| T |
14963885 |
cgtttgcataaaacaaccaagacaaat |
14963859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 336 - 613
Target Start/End: Original strand, 552882 - 553159
Alignment:
| Q |
336 |
cataaaataatgcaatatttcccaaagtttctagtttgacataattcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatc |
435 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || |||| |||||||||||||||||| |||||||||||||||||| ||||||| || | | || |
|
|
| T |
552882 |
cataaaataatgcaatgtcacccaaagtttccagcttgatataattcatggttgagaagtctatcttgtatacattcaatatttcctcagaagcaatatg |
552981 |
T |
|
| Q |
436 |
aaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataa |
535 |
Q |
| |
|
|| || |||||||||| |||||||| |||||| ||| || | ||| | | | |||||| || ||||||||||| | || |||||| ||||||| || |
|
|
| T |
552982 |
aatcaataaaagttgtccatcacaactaaccatcctgaggagtgaggtagatgttacatcgggtgtactcttcagttctaaaaattttatatttgtggaa |
553081 |
T |
|
| Q |
536 |
ttcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaacc |
613 |
Q |
| |
|
|||||| |||| || ||||||||||| || | ||||||||| ||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
553082 |
ttcaagtcaagtacacctatgttggccttgtcagtgacaacgtatatagtatgatgcaaaacaacaaagtcaacaacc |
553159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 336 - 613
Target Start/End: Original strand, 540686 - 540963
Alignment:
| Q |
336 |
cataaaataatgcaatatttcccaaagtttctagtttgacataattcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatc |
435 |
Q |
| |
|
|||||||||||||||| | ||||||||||| || |||| |||||||||||||||||| |||||||||||||||||| ||||||| | | | || |
|
|
| T |
540686 |
cataaaataatgcaatgtcacccaaagtttccagcttgatataattcatggttgagaagtctatcttgtatacattcaatatttcctcggaagcaatatg |
540785 |
T |
|
| Q |
436 |
aaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataa |
535 |
Q |
| |
|
|| ||||||||||||| |||||||| |||||| ||| || | | | | | | |||||| || ||||||||||| | || | |||| ||||||| || |
|
|
| T |
540786 |
aatcactaaaagttgtccatcacaactaaccatcctgaggagtgaagtagatgttacatcgggtgtactcttcagttctaaatattttatatttgtggaa |
540885 |
T |
|
| Q |
536 |
ttcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaacc |
613 |
Q |
| |
|
|||||| |||| || ||||||||||| || | ||||||||| ||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
540886 |
ttcaagtcaagtacacctatgttggccttgtcagtgacaacgtatatagtatgatgcaaaacaacaaagtcaacaacc |
540963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 336 - 680
Target Start/End: Original strand, 485863 - 486207
Alignment:
| Q |
336 |
cataaaataatgcaatatttcccaaagtttctagtttgacataattcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatc |
435 |
Q |
| |
|
|||||||||| ||||| | ||||||||||| || ||||||||||||||||||||||| ||||||||||| |||||| ||||||| | || || |
|
|
| T |
485863 |
cataaaataaggcaatgtcgcccaaagtttccagcttgacataattcatggttgagaagtctatcttgtaaacattcaatatttcctcggactcaatatg |
485962 |
T |
|
| Q |
436 |
aaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataa |
535 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||| ||| | | | | | |||||| || ||||||||| | || |||||| ||||||| || |
|
|
| T |
485963 |
aaccactaaaagttgtccatcacaacaaaccaaccttaggtgtgacatagatgttacatcgggcatactcttcatttctaaaaattttatatttgaggaa |
486062 |
T |
|
| Q |
536 |
ttcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcg |
635 |
Q |
| |
|
|||||| | || || |||||| |||| | || |||||||||||||| ||||||| || || ||||||||||||||| ||| |||| || | |||| |
|
|
| T |
486063 |
ttcaagtcgagtacacctatgatggcctcgttggtgacaacatatatagtattatgaaacacaacaaagtcaacaaccttccatgcatttcccattgtta |
486162 |
T |
|
| Q |
636 |
aataagtaacccagccacaattttgagattgatagacatgcaaac |
680 |
Q |
| |
|
|||| |||||||| || ||||| |||| |||||||||| ||||| |
|
|
| T |
486163 |
aatatgtaacccaacccaaatttcgagactgatagacatacaaac |
486207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 439 - 680
Target Start/End: Original strand, 530022 - 530263
Alignment:
| Q |
439 |
cactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataattc |
538 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||| | ||| | | | || ||| || |||||||||| | || |||||| ||||||| ||||| |
|
|
| T |
530022 |
cactaaaagttgtccatcacaactaaccaaccttaggtgtgaggtagatgttaaatcgggcatactcttcagttctaaaaattttatatttgtggaattc |
530121 |
T |
|
| Q |
539 |
aagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaat |
638 |
Q |
| |
|
||| | || || ||||||||||| || | ||||||||||||||| |||| |||||||| ||||||||||||||| || | || || | |||| |||| |
|
|
| T |
530122 |
aagtcgagtacacctatgttggccttgtcagtgacaacatatatagtattctgcaaaacaacaaagtcaacaaccttcaatggatttccctttgttgaat |
530221 |
T |
|
| Q |
639 |
aagtaacccagccacaattttgagattgatagacatgcaaac |
680 |
Q |
| |
|
| ||| |||| ||| ||||| ||||||| ||||||||||||| |
|
|
| T |
530222 |
aggtagcccaaccaaaatttcgagattggtagacatgcaaac |
530263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 337 - 613
Target Start/End: Original strand, 572715 - 572991
Alignment:
| Q |
337 |
ataaaataatgcaatatttcccaaagtttctagtttgacataattcatggttgagaaatctatcttgtatacattccttatttccccacacgttgaatca |
436 |
Q |
| |
|
||||||||||||||| | ||||||||||| || |||| |||||||||||||||||| |||||||||||||||||| ||||||| | | || | |
|
|
| T |
572715 |
ataaaataatgcaatgtcacccaaagtttccagcttgatataattcatggttgagaagtctatcttgtatacattcaatatttcctgggaagcaatatga |
572814 |
T |
|
| Q |
437 |
accactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataat |
536 |
Q |
| |
|
| ||||||||||||| |||||||| |||||| ||| || | ||| | | | |||||| || ||||||||||| | || ||| |||||| ||| |
|
|
| T |
572815 |
atcactaaaagttgtccatcacaactaaccatcctgaggagtgaggtagatgttacatcgggtgtactcttcagttctaaaaaaaatttatttgtggaat |
572914 |
T |
|
| Q |
537 |
tcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaacc |
613 |
Q |
| |
|
||||| |||| || ||||||||||| || | ||||||||| ||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
572915 |
tcaagtcaagtacacctatgttggccttgtcagtgacaacgtatatagtatgatgcaaaacaacaaagtcaacaacc |
572991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 490 - 613
Target Start/End: Original strand, 30858986 - 30859109
Alignment:
| Q |
490 |
tacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatattatatta |
589 |
Q |
| |
|
||||||||||||||||||||| | || || || ||||||||| | ||||||| ||| | ||||||||| || || | ||||||||||||||| |||| |
|
|
| T |
30858986 |
tacatcaggagtactcttcagttgtaaaacatttatatttgcagagttcaagctaagtatccctatgttagccttgtcagtgacaacatatatggtattg |
30859085 |
T |
|
| Q |
590 |
tgcaaaactacaaagtcaacaacc |
613 |
Q |
| |
|
|||||||| |||||||||| |||| |
|
|
| T |
30859086 |
tgcaaaacaacaaagtcaataacc |
30859109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 371 - 411
Target Start/End: Original strand, 39193333 - 39193373
Alignment:
| Q |
371 |
ttgacataattcatggttgagaaatctatcttgtatacatt |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
39193333 |
ttgacataattcatggttgagaaatctatcttgtacacatt |
39193373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 524 - 679
Target Start/End: Original strand, 563173 - 563328
Alignment:
| Q |
524 |
atatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcat |
623 |
Q |
| |
|
|||||||||||||||||| | || || ||||||||| || | ||||| || || || ||||||| ||||| ||||||||||||||| ||| | || |
|
|
| T |
563173 |
atatttgcataattcaagtcgagtacacctatgttgatcttgtcggtgacgacgtaaatagtattatgaaaaacaacaaagtcaacaaccttccatggat |
563272 |
T |
|
| Q |
624 |
ctctcgttgtcgaataagtaacccagccacaattttgagattgatagacatgcaaa |
679 |
Q |
| |
|
|| | |||| ||||| ||| |||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
563273 |
ttccctttgttgaataggtagcccaaccaaaatttcgagattgatagacatgcaaa |
563328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 496 - 615
Target Start/End: Original strand, 38866834 - 38866953
Alignment:
| Q |
496 |
aggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaa |
595 |
Q |
| |
|
||||||||||||||| | || ||| || ||||||||| ||||||| | || | ||| |||||||| || | ||||| ||||||||| |||| |||||| |
|
|
| T |
38866834 |
aggagtactcttcagatctaaaaagtttatatttgcagaattcaaactgagtatcccaatgttggccttgtcagtgataacatatatggtattgtgcaaa |
38866933 |
T |
|
| Q |
596 |
actacaaagtcaacaaccct |
615 |
Q |
| |
|
|| ||||| ||||||||||| |
|
|
| T |
38866934 |
acaacaaaatcaacaaccct |
38866953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 550 - 613
Target Start/End: Original strand, 39193515 - 39193578
Alignment:
| Q |
550 |
ccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaacc |
613 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
39193515 |
ccctatgttggctttgttagtgacaacgtatatggtattgtgcaaaacaacaaagtcaacaacc |
39193578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 540434 - 540500
Alignment:
| Q |
84 |
tacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc |
150 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||| || |||||||||||||| |||| |||||||| |
|
|
| T |
540434 |
tacaataaccatgttactcatctagagaataatccacctcatattgttgatgtttaaagcaccaatc |
540500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 485609 - 485677
Alignment:
| Q |
82 |
tgtacaataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc |
150 |
Q |
| |
|
|||||||||| || |||||||| || ||||| |||| || |||||||||||||| ||||| |||||||| |
|
|
| T |
485609 |
tgtacaataaccatgttactcatctggagaaaaatccacctcatattgttgatgtctaaagcaccaatc |
485677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 638 - 680
Target Start/End: Original strand, 474619 - 474661
Alignment:
| Q |
638 |
taagtaacccagccacaattttgagattgatagacatgcaaac |
680 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||| ||||| |
|
|
| T |
474619 |
taagtaacccagtcagaattttgagattgatagacattcaaac |
474661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 340 - 405
Target Start/End: Original strand, 38866648 - 38866713
Alignment:
| Q |
340 |
aaataatgcaatatttcccaaagtttctagtttgacataattcatggttgagaaatctatcttgta |
405 |
Q |
| |
|
|||||||||||| | ||||||| ||| | ||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
38866648 |
aaataatgcaatgtcacccaaagattccaacttgacataagtcatggttgagaagtctatcttgta |
38866713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 94 - 682
Target Start/End: Original strand, 32347364 - 32347952
Alignment:
| Q |
94 |
aagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaatg |
193 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| |||| ||||||||||||||| || || |||| ||| |||||| | ||||||||||| ||||| |
|
|
| T |
32347364 |
aagttattcaactagagaataatctacttcagattgtagatgtctaaaacaccaatcgaacttgagggatctttttccataaggagctggaagcataatg |
32347463 |
T |
|
| Q |
194 |
catttttgcaattttttatcatctcctgaatacacactgcataccgcagataaaataccgatgacatacacagagtttctctcatatccccacaagtttg |
293 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| |||| |||| | ||| | | || |||| |||||||| ||||||||||||||| ||||| |
|
|
| T |
32347464 |
catttttgcaatcttttatcatcccctgaatagacacggcatgttgtagaatcttcattgttggcataaacagagttgctctcatatccccacctgtttg |
32347563 |
T |
|
| Q |
294 |
ggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttcccaaagtttctagtttgacataattcatggttgagaa |
393 |
Q |
| |
|
||||| ||||||||||||| |||||| || ||| | | |||||| |||||||| | || ||||||| | |||||||||||||||||||||||| |
|
|
| T |
32347564 |
ggttgctcaatgcataacaatttctcggcctacaattcgcagcataaagtaatgcaacgtcgcctaaagttttcaatttgacataattcatggttgagaa |
32347663 |
T |
|
| Q |
394 |
atctatcttgtatacattccttatt-tccccacacgttgaatcaaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtac |
492 |
Q |
| |
|
|||||||| || || |||| |||| | | || || || ||||||||||||||||||| |||||||||||||||||||| || | | | ||| | |
|
|
| T |
32347664 |
gtctatcttatacactttccatattgtactca-actttaaatcaaccactaaaagttgctcatcacaattaaccaacctaaggaacgtgtggtatggttc |
32347762 |
T |
|
| Q |
493 |
atcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgc |
592 |
Q |
| |
|
||| ||||||||||||| ||||||||| ||||||||||| ||||||||| || |||||||| ||||| || | |||||||| |||||||||||||||| |
|
|
| T |
32347763 |
atcgggagtactcttcaaatttagaaatctaatatttgcagaattcaagcttagtacccctatattggccttatgagtgacaatatatattatattatgc |
32347862 |
T |
|
| Q |
593 |
aaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgatagacatgcaaacga |
682 |
Q |
| |
|
||||| |||||||||||||| ||||| || |||| || |||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
32347863 |
aaaaccacaaagtcaacaactctccctaaatgtctctttatcgaataagtaacccacccacaatttcgagattgatagacatgcaaacga |
32347952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 356 - 410
Target Start/End: Original strand, 25837203 - 25837257
Alignment:
| Q |
356 |
cccaaagtttctagtttgacataattcatggttgagaaatctatcttgtatacat |
410 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| ||||| ||||| |||| |
|
|
| T |
25837203 |
cccaaagtttctagcttctcataattcatggttgagaagtctattttgtacacat |
25837257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 5e-64; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 92 - 679
Target Start/End: Complemental strand, 31266969 - 31266374
Alignment:
| Q |
92 |
gcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatcgtacatgtgggaacttgttccatgaagagctggaagcgtaa |
191 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| || || ||| |||||| || | ||| || | ||||||||||| || | ||| |||||| |||| |
|
|
| T |
31266969 |
gcaaattactcaactagagaataatctacttcagatcgtagatttctaaaatactagtcgaacttaaaggaacttgttctattaggagttggaagtgtaa |
31266870 |
T |
|
| Q |
192 |
tgcatttttgcaatttt---ttatcatctcctgaatacacactgcataccgcagataaaata--ccgatgacatacacagagtttctctcatatccccac |
286 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||| ||||| | || |||| | | | ||||||||| |||||| ||||||||||||||| |
|
|
| T |
31266869 |
tgcatttttgcaattttattttatcatcccctgaatagacattgcattttgttgaaaaaaaaaactgctgacatacatagagttgctctcatatccccac |
31266770 |
T |
|
| Q |
287 |
aagtttgggttgttcaatgcataacagtttctcccgaaaccatttgaaacataaaataatgcaatatttcccaaagtttctagtttgacataattcatgg |
386 |
Q |
| |
|
||| |||||| ||||||||||||| |||| | | |||| | ||||||||||||||| | |||||||| | |||| |||||||||||||| |
|
|
| T |
31266769 |
ctgttggggttgctcaatgcataacaatttcccataatttgatttccagtataaaataatgcaatgtcgcccaaagtgttcagttcgacataattcatgg |
31266670 |
T |
|
| Q |
387 |
ttgagaaatctatcttgtatacattccttatttccccacacgttgaatcaaccactaaaagttgttcatcacaattaaccaaccttgggtataa---gga |
483 |
Q |
| |
|
||| ||| ||||||||||| || || | |||| | | ||| ||||||||||||||||||| |||||||||||||||||||| ||||| | | |
|
|
| T |
31266669 |
ttgtgaagtctatcttgtacactttgcatattgtgctccgtgttaaatcaaccactaaaagttgctcatcacaattaaccaacctaaggtatcatctgtg |
31266570 |
T |
|
| Q |
484 |
aaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatatt |
583 |
Q |
| |
|
||| ||||||||||||||||| ||||| ||||||||| ||||||||| | ||||||||| ||| |||||||||||||| || | |||||||||||||||| |
|
|
| T |
31266569 |
aaatggtacatcaggagtacttttcagttttagaaatataatatttgtagaattcaagctaagtacccctatgttggccttgtgagtgacaacatatatt |
31266470 |
T |
|
| Q |
584 |
atattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgatagacatgcaaa |
679 |
Q |
| |
|
||||||||||| || ||||||| | || |||||| || | | ||||| ||| ||| ||| ||||||||| |||||||||||||||||||| |
|
|
| T |
31266469 |
atattatgcaagaccgcaaagtccaaaagcctcccataattttcctttgtcatgtaactaatccaaccacaatttcgagattgatagacatgcaaa |
31266374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 499 - 709
Target Start/End: Original strand, 43156610 - 43156820
Alignment:
| Q |
499 |
agtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaact |
598 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||| | ||||||| || |||||||||||||| || ||||||| |||||||||||| ||||||||| |
|
|
| T |
43156610 |
agtactcttcaattttagaaatcttatatttgcagagttcaagctaaatacccctatgttggccttattagtgatgacatatattatactatgcaaaagc |
43156709 |
T |
|
| Q |
599 |
acaaagtcaacaaccctccccgcatctctcgttgtcgaataagtaacccagccacaattttgagattgatagacatgcaaacgatattcgcataaaatca |
698 |
Q |
| |
|
||||||||||||||| || || | | | ||||||||||||||||| |||||| || ||| |||||||||||||||||| || | ||||||||| |
|
|
| T |
43156710 |
acaaagtcaacaaccacacctaaattttccttggtcgaataagtaacccaaccacaacttctagaatgatagacatgcaaacgacttttgtataaaatca |
43156809 |
T |
|
| Q |
699 |
acaagacaaat |
709 |
Q |
| |
|
|||||||||| |
|
|
| T |
43156810 |
ccaagacaaat |
43156820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 337 - 402
Target Start/End: Original strand, 43156461 - 43156526
Alignment:
| Q |
337 |
ataaaataatgcaatatttcccaaagtttctagtttgacataattcatggttgagaaatctatctt |
402 |
Q |
| |
|
||||| ||||||||| || || ||||||| |||||||||||| ||||||||||||| |||||||| |
|
|
| T |
43156461 |
ataaagtaatgcaatgttgcctaaagttttcagtttgacataactcatggttgagaagtctatctt |
43156526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 1204363 - 1204404
Alignment:
| Q |
110 |
gaataatctacttcatattgttgatgcctaaaacaccaatcg |
151 |
Q |
| |
|
||||||||||| ||||| |||||||| ||||||||||||||| |
|
|
| T |
1204363 |
gaataatctacctcatagtgttgatgtctaaaacaccaatcg |
1204404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 490 - 613
Target Start/End: Original strand, 33466075 - 33466198
Alignment:
| Q |
490 |
tacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatattatatta |
589 |
Q |
| |
|
|||| |||||||| ||||||| | || ||| || ||||||||||| ||||||| || | |||||||||||| || | ||||||||||||||| |||||| |
|
|
| T |
33466075 |
tacaacaggagtattcttcagttctaaaaaatttatatttgcatatttcaagctgagcatccctatgttggccttgtcagtgacaacatatatgatatta |
33466174 |
T |
|
| Q |
590 |
tgcaaaactacaaagtcaacaacc |
613 |
Q |
| |
|
| ||||| ||||||||||||||| |
|
|
| T |
33466175 |
tttaaaacaacaaagtcaacaacc |
33466198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 336 - 411
Target Start/End: Complemental strand, 3048238 - 3048163
Alignment:
| Q |
336 |
cataaaataatgcaatatttcccaaagtttctagtttgacataattcatggttgagaaatctatcttgtatacatt |
411 |
Q |
| |
|
|||||||||||||||| | || ||||||| | |||||||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
3048238 |
cataaaataatgcaatgtcacctaaagttttcaacttgacataatccatggttgagaaatctatcttgtacacatt |
3048163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 490 - 613
Target Start/End: Complemental strand, 34605684 - 34605561
Alignment:
| Q |
490 |
tacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatattatatta |
589 |
Q |
| |
|
|||| |||||||||||||||| | || ||| || ||||||||||| ||||||| || | ||||||| |||| || | ||||||||||||||| ||| | |
|
|
| T |
34605684 |
tacaccaggagtactcttcagttctaaaaaatttatatttgcatatttcaagctgagtatccctatgctggccttgtcagtgacaacatatatgatagaa |
34605585 |
T |
|
| Q |
590 |
tgcaaaactacaaagtcaacaacc |
613 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
34605584 |
tttaaaacagcaaagtcaacaacc |
34605561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 34606114 - 34606051
Alignment:
| Q |
87 |
aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc |
150 |
Q |
| |
|
|||||||| | |||||||| |||| ||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
34606114 |
aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc |
34606051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 490 - 613
Target Start/End: Complemental strand, 34726961 - 34726838
Alignment:
| Q |
490 |
tacatcaggagtactcttcagctttagaaatttaatatttgcataattcaagccaaggacccctatgttggcatttttagtgacaacatatattatatta |
589 |
Q |
| |
|
|||| |||||||||||||||| | || ||| || ||||||||||| ||||||| || | ||||||| |||| || | ||||||||||||||| ||| | |
|
|
| T |
34726961 |
tacaccaggagtactcttcagttctaaaaaatttatatttgcatatttcaagctgagtatccctatgctggccttgtcagtgacaacatatatgatagaa |
34726862 |
T |
|
| Q |
590 |
tgcaaaactacaaagtcaacaacc |
613 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
34726861 |
tttaaaacagcaaagtcaacaacc |
34726838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 87 - 150
Target Start/End: Complemental strand, 34727391 - 34727328
Alignment:
| Q |
87 |
aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc |
150 |
Q |
| |
|
|||||||| | |||||||| |||| ||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
34727391 |
aataagcatgctactcaacgagagtataatctacctcatattgtagatgtctaaaacaccaatc |
34727328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 33465645 - 33465708
Alignment:
| Q |
87 |
aataagcaagttactcaactagagaataatctacttcatattgttgatgcctaaaacaccaatc |
150 |
Q |
| |
|
|||||||| | ||||||| |||| ||||||||| ||||||||| |||| |||||||||||||| |
|
|
| T |
33465645 |
aataagcatgctactcaaaaagagtataatctacctcatattgtagatgtctaaaacaccaatc |
33465708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 436 - 680
Target Start/End: Complemental strand, 55773804 - 55773560
Alignment:
| Q |
436 |
aaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataa |
535 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| ||| | | | | | ||| |||| ||| ||||| | || ||| |||||||||||| || |
|
|
| T |
55773804 |
aaccacaaaaagttgttcatcacaactaaccaaccttaggtgtgacaaggaagttacgctaggaatacacttcatttctaaaaacttaatatttgcagaa |
55773705 |
T |
|
| Q |
536 |
ttcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcg |
635 |
Q |
| |
|
|| ||| || | |||||||||||| || | ||||||||||||| | || |||||||| ||||||||||||| | ||| | || || | |||| | |
|
|
| T |
55773704 |
tttaagttgagtatccctatgttggccttgtcgttgacaacatatatagtgttgtgcaaaacaacaaagtcaacaatcatccatggatatcccattgttg |
55773605 |
T |
|
| Q |
636 |
aataagtaacccagccacaattttgagattgatagacatgcaaac |
680 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||||||||||| |
|
|
| T |
55773604 |
aataagtaacccaaccaaaatttcgagattgatagacatgcaaac |
55773560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 436 - 680
Target Start/End: Complemental strand, 55838015 - 55837771
Alignment:
| Q |
436 |
aaccactaaaagttgttcatcacaattaaccaaccttgggtataaggaaaagggtacatcaggagtactcttcagctttagaaatttaatatttgcataa |
535 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| ||| | | | | | ||| |||| ||||||||| | || ||| || ||||||||| || |
|
|
| T |
55838015 |
aaccacaaaaagttgttcatcacaactaaccaaccttaggtgtgacaaggaagttacgctaggaatactcttcatttctaaaaactttatatttgcagaa |
55837916 |
T |
|
| Q |
536 |
ttcaagccaaggacccctatgttggcatttttagtgacaacatatattatattatgcaaaactacaaagtcaacaaccctccccgcatctctcgttgtcg |
635 |
Q |
| |
|
|| ||| || | |||||||||||| || | ||||||||||||| | || |||||||| ||||||||||||| | ||| | || || | |||| | |
|
|
| T |
55837915 |
tttaagttgagtatccctatgttggccttgtcgttgacaacatatatagtgttgtgcaaaacaacaaagtcaacaatcatccatggatatcccattgttg |
55837816 |
T |
|
| Q |
636 |
aataagtaacccagccacaattttgagattgatagacatgcaaac |
680 |
Q |
| |
|
||||||||||||| ||| ||||| ||||||||||||||||||||| |
|
|
| T |
55837815 |
aataagtaacccaaccaaaatttcgagattgatagacatgcaaac |
55837771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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