View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_high_20 (Length: 350)
Name: NF6157_high_20
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_high_20 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 332
Target Start/End: Original strand, 38638391 - 38638712
Alignment:
| Q |
11 |
aatgagactctatgctagcttattgtgtaagtaaccacacatgattactaaattaaactgactaactagataacttgtggcctaagtaatctagttttca |
110 |
Q |
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| T |
38638391 |
aatgagactctatgctagcttattgtgtaagtaaccacacaggattactaaattaaactgactaactagataacttgtggcctaagtaatctagttttca |
38638490 |
T |
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| Q |
111 |
cttatttgttcactatcatcttcatgatgcaataactcgtcaattagggagccccaaacatgtagaacttgccacatcttatgtgttaaattttaaattt |
210 |
Q |
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| T |
38638491 |
cttatctgttcactatcatcttcatgatgcaataactcgtcaattagggagccccaaacatgtagaacttgccacatcttatgtgttaaattttaaattt |
38638590 |
T |
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| Q |
211 |
cagattctcccgtatgatcagcattgttcgctaataaataaagtgcatcagttggctaaagaaaaagatgtagcagcccttgataagatgtcacgttcag |
310 |
Q |
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| T |
38638591 |
cagattctcccgtatgatcagcattgttcgctaataaataaagtgcatcagttggctaaagaaaaagatatagcagcccttgataagatgtcacgttcag |
38638690 |
T |
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| Q |
311 |
aggttggtagttagtttagttt |
332 |
Q |
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| T |
38638691 |
aggttggtagttagtttagttt |
38638712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 207 - 331
Target Start/End: Original strand, 38634333 - 38634457
Alignment:
| Q |
207 |
atttcagattctcccgtatgatcagcattgttcgctaataaataaagtgcatcagttggctaaagaaaaagatgtagcagcccttgataagatgtcacgt |
306 |
Q |
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| T |
38634333 |
atttcagattctccactattaccagcattgttcacttataaataaagtccatcagctggcagaagaaaaagatgtatcaaccctagatgagatgtcaaat |
38634432 |
T |
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| Q |
307 |
tcagaggttggtagttagtttagtt |
331 |
Q |
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| T |
38634433 |
tcagaggttggtagttggtttagtt |
38634457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 331
Target Start/End: Original strand, 38692030 - 38692193
Alignment:
| Q |
164 |
ccaaacatgtagaacttgccacatcttatgtgttaaattttaaatttcagattctcccgtatgatcagcattgttcgctaataaataaagtgcatcagtt |
263 |
Q |
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| T |
38692030 |
ccaaacatgtagaacttgccatatcttat-----actttttcaattgtagattctccattattacaagtattgttcactaataaataaagtacatcaact |
38692124 |
T |
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| Q |
264 |
ggctaaag-aaaaagatgtagcagcccttgataagatgtcacgttcagaggttggtagttagtttagtt |
331 |
Q |
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| T |
38692125 |
gagtgaagaaaaaagatgtaagagtccttgatgagatgtcaagttcagaggctggtaattggtttagtt |
38692193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 29423975 - 29424102
Alignment:
| Q |
11 |
aatgagactctatgctagcttattgtgtaagtaaccacacatgattactaaattaaactgactaactagataacttgtggcctaagtaatctagttttca |
110 |
Q |
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||||||||||||||||| |||||||||| ||||| |||| | |||| |||| ||| |||||||||||||||| ||||||||||||| |||||| |
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| T |
29423975 |
aatgagactctatgctatcttattgtgtgagtaatcacata--attagtaaactaat-----taactagataacttgttgcctaagtaatctgtttttca |
29424067 |
T |
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| Q |
111 |
cttatttgttcactatcatcttcatgatgcaataa |
145 |
Q |
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| T |
29424068 |
ctaatctatttactatcatcttcaagatgtaataa |
29424102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 319
Target Start/End: Original strand, 13568 - 13654
Alignment:
| Q |
233 |
attgttcgctaataaataaagtgcatcagttggctaaagaaaaagatgtagcagcccttgataagatgtcacgttcagaggttggta |
319 |
Q |
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| T |
13568 |
attgttcacttataaataaagtacatcaactgagtgaagaaaaagatgtaacactccttgatgagatgtcaagttcagaggttggta |
13654 |
T |
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