View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_high_22 (Length: 320)
Name: NF6157_high_22
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 105 - 282
Target Start/End: Complemental strand, 23251453 - 23251276
Alignment:
| Q |
105 |
tcaagcgtaaagtgcatctcatcctttttattatatatgaaagaaaatataattttggaatttcagctattgatatagaaaatataatctattgccatct |
204 |
Q |
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| T |
23251453 |
tcaagcgtaaagtgcatctcatcctttttattatatatgaaagaaaatataattttggaatttcagctattgatatagaaaatataatctattgccatct |
23251354 |
T |
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| Q |
205 |
ttgcttagcctgtattaagttgaaggaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggacttt |
282 |
Q |
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| T |
23251353 |
ttgcttagcctgtattaagttgaagaaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggacttt |
23251276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 23251595 - 23251491
Alignment:
| Q |
1 |
ttacatttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23251595 |
ttacatttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaagg |
23251496 |
T |
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| Q |
101 |
aattt |
105 |
Q |
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||||| |
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| T |
23251495 |
aattt |
23251491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 130 - 282
Target Start/End: Complemental strand, 23266001 - 23265846
Alignment:
| Q |
130 |
ttttattatatatgaaagaa-aatataattttggaatttcagctattgatatagaaaatataatctattgccatctttgcttagcctgtat--taagttg |
226 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || || ||||||| |
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| T |
23266001 |
ttttattatatatgaaagaagaatataactttggaatttcagcttttgatatagaaaatataatctattgccatccttgcttagcttgcattataagttg |
23265902 |
T |
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| Q |
227 |
aaggaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggacttt |
282 |
Q |
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| T |
23265901 |
aaagaggtaatatagcgtctcttgtcttattcttctcttctcttttgtaggacttt |
23265846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 23257564 - 23257464
Alignment:
| Q |
6 |
tttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaattt |
105 |
Q |
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| T |
23257564 |
tttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaattctgcatatacataggttgaaattgaaaaggagttt |
23257465 |
T |
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| Q |
106 |
c |
106 |
Q |
| |
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| T |
23257464 |
c |
23257464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 23247184 - 23247079
Alignment:
| Q |
1 |
ttacatttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaagg |
100 |
Q |
| |
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|||| ||| |||||||||||||| |||||||||||||||||||||||| ||| |||||||||| |||| ||||||||||||||||| || || |||||| |
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| T |
23247184 |
ttacttttctttttggattgtaggataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaagg |
23247085 |
T |
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| Q |
101 |
aatttc |
106 |
Q |
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|||||| |
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| T |
23247084 |
aatttc |
23247079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 68
Target Start/End: Complemental strand, 23266125 - 23266063
Alignment:
| Q |
6 |
tttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaa |
68 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |
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| T |
23266125 |
tttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaa |
23266063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 23246898 - 23246837
Alignment:
| Q |
220 |
taagttgaaggaggtaatacggtgtctcttgtcttattcttctcttctcttttgtaggactt |
281 |
Q |
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||||||| ||||||||| | |||| |||||||||| | ||||||||||||||||||||||| |
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| T |
23246898 |
taagttgtaggaggtaaaatagtgtatcttgtcttaattttctcttctcttttgtaggactt |
23246837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 23247032 - 23246979
Alignment:
| Q |
115 |
agtgcatctcatcctttttattatatatgaaagaa-aatataattttggaattt |
167 |
Q |
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|||||||||||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
23247032 |
agtgcatctcatgacttttattatatatgaaaaaagaatataattttggaattt |
23246979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 23283196 - 23283160
Alignment:
| Q |
10 |
tttttggattgtagaataggaaatgtctatactacaa |
46 |
Q |
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||||||||||||||||| | ||||||||||||||||| |
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| T |
23283196 |
tttttggattgtagaattgaaaatgtctatactacaa |
23283160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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