View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_high_23 (Length: 315)
Name: NF6157_high_23
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_high_23 |
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| [»] scaffold0370 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 38638302 - 38637999
Alignment:
| Q |
1 |
tcgtcgcaaactctaagataacgaataatctaatatcagtcttctgaagtataagttcatgacctttatcgttggaacatctgagacaatgacttgatcg |
100 |
Q |
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| T |
38638302 |
tcgtctcaaactctaagataacgaataatctaatatcagtcttctgaagtataagttcatgacctttatcgttggaacatctgagacaatgacttgatcg |
38638203 |
T |
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| Q |
101 |
atgtcaatttgtcaaaacaaatgacactagtaagtgcaattatatcaaattcatagattatggttttaaaaacattacctcctcgtgatgcaattttttc |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638202 |
atgtcaatttgtcaaaacaaatgacactagtaattgcaattatatcaaattcatagattatggttttaaaaacattacctcctcgtgatgcaattttttc |
38638103 |
T |
|
| Q |
201 |
aatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataattctctgtttatagcttctagttctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38638102 |
aatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataattctctgtttatagcttctagttctt |
38638003 |
T |
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| Q |
301 |
tcat |
304 |
Q |
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|||| |
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| T |
38638002 |
tcat |
38637999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 175 - 303
Target Start/End: Complemental strand, 38634082 - 38633954
Alignment:
| Q |
175 |
ttacctcctcgtgatgcaattttttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataa |
274 |
Q |
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| T |
38634082 |
ttacctcctcatgatgcaagtttttcaattttaaaatcctttgatatgcttcaccctttttcttatgattctctgttaattttgctttcaaagaatataa |
38633983 |
T |
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| Q |
275 |
ttctctgtttatagcttctagttctttca |
303 |
Q |
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| T |
38633982 |
ttctccatttatggcttctagttctttca |
38633954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 195 - 276
Target Start/End: Complemental strand, 38690730 - 38690649
Alignment:
| Q |
195 |
tttttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataatt |
276 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||| | |||||||||||||||| |
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| T |
38690730 |
tttttcaatttgaaaatcctttgatatgcttcatccttattcttatgcttctctatcaattttgcactcaaagaatataatt |
38690649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 176 - 279
Target Start/End: Original strand, 45335472 - 45335575
Alignment:
| Q |
176 |
tacctcctcgtgatgcaattttttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataat |
275 |
Q |
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||||||||| |||||||| |||||| |||| ||||| ||||||||||||||| ||||||||||||| |||||| |||| |||||||||||| |||||| | |
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| T |
45335472 |
tacctcctcatgatgcaaatttttcgattttaaaattctttgatatgcttcaccctttttcttatgattctctttcaacttttctctcaaataatatagt |
45335571 |
T |
|
| Q |
276 |
tctc |
279 |
Q |
| |
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|||| |
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| T |
45335572 |
tctc |
45335575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0370 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0370
Description:
Target: scaffold0370; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 197 - 294
Target Start/End: Complemental strand, 13167 - 13070
Alignment:
| Q |
197 |
tttcaatttcaaaatcctttgatatgcttcatcctttttcttatgcttctctgtcaatttttctctcaaagaatataattctctgtttatagcttcta |
294 |
Q |
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||||||||||||||||||||| | |||||||| |||||| |||| ||||| |||||||||||||||| |||||||||| || |||||| ||||||| |
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| T |
13167 |
tttcaatttcaaaatcctttgctttgcttcatactttttgttatacttctgattcaatttttctctcaatgaatataattttccgtttatggcttcta |
13070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Complemental strand, 10434149 - 10434107
Alignment:
| Q |
84 |
agacaatgacttgatcgatgtcaatttgtcaaaacaaatgaca |
126 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||| |
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| T |
10434149 |
agacaatgacttgatcgatgtcaatttgacaaaagcaatgaca |
10434107 |
T |
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