View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_high_24 (Length: 311)
Name: NF6157_high_24
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 24509370 - 24509652
Alignment:
| Q |
18 |
aactaatgctaccaacaaaaatttgaacaccacttcctctgattctactatttcttctgaccaaggaaatgctgggaaatcggtcttgtcaaatctgaat |
117 |
Q |
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| T |
24509370 |
aactaatgctaccaacaaaaatttgaacaccacttcctccgattctactatttcttctgaccaaggaaatgctgggaaatcggtcttgtcaaatctgaat |
24509469 |
T |
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| Q |
118 |
tttattttatattcacatttgaatgtgttttcctttttgatatcagttatggcaatacttatcatgactccgtggggggccgtaggcggtactctggtgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24509470 |
tttattttatattcacatttgaatgtgttttcctttttgatatcagttatggcaatacttatcatgactccgtggggggccgtaggcggtactctggtgt |
24509569 |
T |
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| Q |
218 |
tcggtccggtggtttggttcgcccttagttatatgtatgctatggcggtcatatcccctgcacctttcagtcccttaattcat |
300 |
Q |
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| T |
24509570 |
tcggtccggtggtttggtttgcccttagttatatgtatgctatgacggtcatatcccctgcacctttcagtcccttaattcat |
24509652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 108
Target Start/End: Original strand, 29552848 - 29552921
Alignment:
| Q |
32 |
acaaaaatttgaacaccacttcctctgattctactatttcttctgaccaaggaaatgctgggaaatcggtcttgtca |
108 |
Q |
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||||||||||||||| ||||||||| |||||||||||||| | || |||||||||||| ||||||||| ||||| |
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| T |
29552848 |
acaaaaatttgaacatcacttcctccaattctactatttctac---cctaggaaatgctggaaaatcggtcatgtca |
29552921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 108
Target Start/End: Complemental strand, 26086434 - 26086365
Alignment:
| Q |
39 |
tttgaacaccacttcctctgattctactatttcttctgaccaaggaaatgctgggaaatcggtcttgtca |
108 |
Q |
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|||||||| ||||||||| |||||||||||||| | ||||||||||| ||||||||| ||||||||| |
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| T |
26086434 |
tttgaacatcacttcctccaattctactatttctagtacccaaggaaatgttgggaaatctgtcttgtca |
26086365 |
T |
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