View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6157_high_29 (Length: 280)

Name: NF6157_high_29
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6157_high_29
NF6157_high_29
[»] chr7 (5 HSPs)
chr7 (102-272)||(6103180-6103361)
chr7 (15-86)||(6102989-6103060)
chr7 (15-80)||(41712378-41712443)
chr7 (15-79)||(49017213-49017277)
chr7 (38-79)||(42513062-42513103)
[»] chr8 (2 HSPs)
chr8 (15-77)||(11825086-11825148)
chr8 (15-60)||(23090090-23090135)
[»] chr2 (4 HSPs)
chr2 (15-68)||(31211899-31211952)
chr2 (15-63)||(45327420-45327468)
chr2 (15-68)||(31193263-31193316)
chr2 (30-79)||(40400909-40400958)
[»] chr4 (3 HSPs)
chr4 (15-79)||(36050749-36050813)
chr4 (15-79)||(36054008-36054072)
chr4 (15-77)||(12638096-12638158)
[»] chr1 (1 HSPs)
chr1 (15-79)||(18583886-18583950)
[»] chr5 (2 HSPs)
chr5 (21-79)||(24108790-24108848)
chr5 (15-68)||(671548-671601)
[»] chr6 (1 HSPs)
chr6 (38-79)||(7426695-7426736)


Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 102 - 272
Target Start/End: Original strand, 6103180 - 6103361
Alignment:
Q  102 catcaacatattaaaacaaaacctacacgtatttttcacccttgat-----tcaatcaagaacaattcagagagactactcaatcatttcactcaattct 196  Q
    |||||||||||||||||||||||||||| |||||||||||||||||     |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6103180 catcaacatattaaaacaaaacctacacatatttttcacccttgatcactttcaatcaagaacaattcaaagagactactcaatcatttcactcaattct 6103279  T
Q  197 aacataacaattgc----ttatta-attacatcagacatcaaaatccctaaact-aaaattactccttatttgtttcatctc 272  Q
    ||||||||||||||    |||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||    
T  6103280 aacataacaattgcatatttattatattacatcagacatcaaattccctaaactaaaaattactccttatttgtttcatctc 6103361  T

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Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 6102989 - 6103060
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaatttagtcgtatcaataacat 86  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||  || |||||||||||||    
T  6102989 cttttatctctagttttctctcttaatttatggagtgtgattcctactcgaattgggttgtatcaataacat 6103060  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 41712378 - 41712443
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaatttagtcgtatcaa 80  Q
    ||||| |||||| |||||||||||||||| ||||||||||||| ||||||||||  ||||||||||    
T  41712378 cttttgtctctagttttctctcttaatttttggagtgtgatccttactcgaattgggtcgtatcaa 41712443  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 49017213 - 49017277
Alignment:
Q  15 cttttatctctaattttctctct-taatttatggagtgtgatccctactcgaatttagtcgtatca 79  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||||| |||||||  |||||||||    
T  49017213 cttttatctctagttt-ctctctctaatttatggagtgtgatccctattcgaattaggtcgtatca 49017277  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 42513103 - 42513062
Alignment:
Q  38 taatttatggagtgtgatccctactcgaatttagtcgtatca 79  Q
    |||||| ||||||||||||||||||||||||  |||||||||    
T  42513103 taatttctggagtgtgatccctactcgaattgggtcgtatca 42513062  T

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Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 11825086 - 11825148
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaatttagtcgtat 77  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  11825086 cttttatctttaattttctctcttaatttatggagtgtgatccctattcgaattgagtcgtat 11825148  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 60
Target Start/End: Original strand, 23090090 - 23090135
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatcccta 60  Q
    ||||||||||| |||||||||| |||||||||||||| ||| ||||    
T  23090090 cttttatctctgattttctctcataatttatggagtgcgattccta 23090135  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 31211899 - 31211952
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaatt 68  Q
    |||||||||||| |||||||||||||||| ||||||||||||||||||||||||    
T  31211899 cttttatctctagttttctctcttaatttctggagtgtgatccctactcgaatt 31211952  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 45327468 - 45327420
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatccctactc 63  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45327468 cttttatctctaattttctctcttaatttctggagtgtgatccctactc 45327420  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 31193263 - 31193316
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaatt 68  Q
    |||| ||||||| |||||||||||||||| | ||||||||||||||||||||||    
T  31193263 ctttcatctctagttttctctcttaatttctagagtgtgatccctactcgaatt 31193316  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 40400958 - 40400909
Alignment:
Q  30 ttctctcttaatttatggagtgtgatccctactcgaatttagtcgtatca 79  Q
    |||||||| ||||| |||||||||||||||||||||||| |||| |||||    
T  40400958 ttctctctaaatttctggagtgtgatccctactcgaattgagtcatatca 40400909  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 36050749 - 36050813
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaatttagtcgtatca 79  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||  |||||||||    
T  36050749 cttttatctctagttttctcttttaatttttggagtgtgatccctactcgaattgggtcgtatca 36050813  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 36054008 - 36054072
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaatttagtcgtatca 79  Q
    |||||||||||| |||||||| ||||||| ||||||||||||||||||||||||  |||||||||    
T  36054008 cttttatctctagttttctcttttaatttttggagtgtgatccctactcgaattgggtcgtatca 36054072  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 12638096 - 12638158
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaatttagtcgtat 77  Q
    ||||||| ||||  ||||||||||||||| ||||||| ||| ||||||||||||  |||||||    
T  12638096 cttttatatctagatttctctcttaatttctggagtgcgatacctactcgaattgggtcgtat 12638158  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 18583950 - 18583886
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaatttagtcgtatca 79  Q
    |||||||||||| |||||||||||||||| |||||||| ||| |||||||||||  |||||||||    
T  18583950 cttttatctctagttttctctcttaatttctggagtgtaatctctactcgaattgggtcgtatca 18583886  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 79
Target Start/End: Original strand, 24108790 - 24108848
Alignment:
Q  21 tctctaattttctctcttaatttatggagtgtgatccctactcgaatttagtcgtatca 79  Q
    |||||| ||||||  |||||||| ||||||||||||||||||||||||  |||||||||    
T  24108790 tctctagttttcttccttaatttctggagtgtgatccctactcgaattgggtcgtatca 24108848  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 671548 - 671601
Alignment:
Q  15 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaatt 68  Q
    ||||||||||||  ||||||||||||||| || ||||||||||| |||||||||    
T  671548 cttttatctctagctttctctcttaatttctgaagtgtgatcccaactcgaatt 671601  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 79
Target Start/End: Original strand, 7426695 - 7426736
Alignment:
Q  38 taatttatggagtgtgatccctactcgaatttagtcgtatca 79  Q
    |||||| ||||||||||||||||||||||||  |||||||||    
T  7426695 taatttctggagtgtgatccctactcgaattgggtcgtatca 7426736  T

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