View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6157_high_32 (Length: 261)
Name: NF6157_high_32
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_high_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 5 - 193
Target Start/End: Complemental strand, 7160682 - 7160494
Alignment:
| Q |
5 |
ttaaagaacaacatgatatttttaggacgcgtaagtatttgaattttaaaataacagatacttccttctcgttcctattctccgaaatattggtaagaaa |
104 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| || |
|
|
| T |
7160682 |
ttaaagaacaacatgatatctataagacgcgtaagtatttgaattttaaaataacagatacttccttctcgttccaattctctgaaatgttggtaagcaa |
7160583 |
T |
|
| Q |
105 |
aattaaagttcgcaacttgcttgcatccaatgattctaacaaaccaatagcatcacttttcaccgttacatgcacgggacttcctacaa |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
7160582 |
aattaaagttcgcaacttgcttgcatccaatgattctaacaaaccaatagcatcacttttcaccattacatgcacgggacttcctacaa |
7160494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 3918077 - 3918236
Alignment:
| Q |
34 |
cgtaagtatttgaattttaaaataacagatacttccttctcgttcctattctccgaaatattggtaagaaaaattaaagttcgcaacttgcttgcatcca |
133 |
Q |
| |
|
|||||||||||||||||| | |||||| | | ||||||||| ||| || |||| ||| | |||| | ||||| |||||||||| ||| ||||||| || |
|
|
| T |
3918077 |
cgtaagtatttgaattttgatataacaaacaattccttctcattcatactctctgaattgttggacaacaaaatcaaagttcgcatctttcttgcattca |
3918176 |
T |
|
| Q |
134 |
atgattctaacaaaccaatagcatcacttttcaccgttacatgcacgggacttcctacaa |
193 |
Q |
| |
|
|||| || |||||||||||||| ||||||| || | |||||||||||||| |||| |||| |
|
|
| T |
3918177 |
atgactccaacaaaccaatagcttcactttgcaacattacatgcacgggatttccgacaa |
3918236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 30 - 193
Target Start/End: Original strand, 3172739 - 3172902
Alignment:
| Q |
30 |
gacgcgtaagtatttgaattttaaaataacagatacttccttctcgttcctattctccgaaatattggtaagaaaaattaaagttcgcaacttgcttgca |
129 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||| | |||||| || |||| | ||||| || |||||| || ||||| |||||||||| | || ||||| |
|
|
| T |
3172739 |
gacgcgtaagtatttgaattttgaaataaaagacaattccttttcattccaagtctcccaattattggaaaacaaaatcaaagttcgcatcctgattgca |
3172838 |
T |
|
| Q |
130 |
tccaatgattctaacaaaccaatagcatcacttttcaccgttacatgcacgggacttcctacaa |
193 |
Q |
| |
|
|||| || | ||||||||||||| |||||||||||| | ||||| ||| ||||| ||||||| |
|
|
| T |
3172839 |
tccaccgactttaacaaaccaatatcatcacttttcaacattacacgcattggactacctacaa |
3172902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 191
Target Start/End: Original strand, 3141081 - 3141242
Alignment:
| Q |
30 |
gacgcgtaagtatttgaattttaaaataacagatacttccttctcgttcctattctccgaaatattggtaagaaaaattaaagttcgcaacttgcttgca |
129 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||| |||||| || ||| || || |||| || || | ||||| |||||||||| |||| ||| | |
|
|
| T |
3141081 |
gacgcgtaagtatttgaattttgaaatgactaataattccttttcattcaacttttctgaaaaatcagtcaacaaaatcaaagttcgcatcttgtttgaa |
3141180 |
T |
|
| Q |
130 |
tccaatgattctaacaaaccaatagcatcacttttcaccgttacatgcacgggacttcctac |
191 |
Q |
| |
|
|||||| || || |||||||||||||| ||||||| | ||| ||||| |||||||||||| |
|
|
| T |
3141181 |
ctcaatgactccaagaaaccaatagcatcccttttcaacattatatgcatgggacttcctac |
3141242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 2710995 - 2711057
Alignment:
| Q |
188 |
ctacaaccttactgtcttgatcaccacatgtcaaataagtccttaattgaacccatttttcat |
250 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||||||||| |||| | |||| ||||||| |
|
|
| T |
2710995 |
ctacaaccttactgccttgagcaccacacatcaaataagtcctcaattcatcccacttttcat |
2711057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 3169240 - 3169330
Alignment:
| Q |
103 |
aaaattaaagttcgcaacttgcttgcatccaatgattctaacaaaccaatagcatcacttttcaccgttacatgcacgggacttcctacaa |
193 |
Q |
| |
|
||||| ||||| |||| | |||||||||||| || ||||||||||||||| |||| |||||| | ||| ||||| ||||||| |||||| |
|
|
| T |
3169240 |
aaaatcaaagtacgcagcctgcttgcatccaccgactctaacaaaccaatatcatccattttcatcattatatgcatgggactttctacaa |
3169330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 3169976 - 3170037
Alignment:
| Q |
188 |
ctacaaccttactgtcttgatcaccacatgtcaaataagtccttaattgaacccatttttca |
249 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||||| | |||||| ||||||||||| |
|
|
| T |
3169976 |
ctacaaccttactaccttgagcaccacacatcaaataagtcttcaattgagcccatttttca |
3170037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 2989740 - 2989680
Alignment:
| Q |
189 |
tacaaccttactgtcttgatcaccacatgtcaaataagtccttaattgaacccatttttca |
249 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||| ||| |||||| |||| |||||| |
|
|
| T |
2989740 |
tacaaccttactgccttgagcaccacacatcaaataaggcctcaattgatcccacttttca |
2989680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 10755366 - 10755427
Alignment:
| Q |
188 |
ctacaaccttactgtcttgatcaccacatgtcaaataagtccttaattgaacccatttttca |
249 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||||||| |||| ||| |||| |||||| |
|
|
| T |
10755366 |
ctacaaccttactgccttgagcaccacacatcaaataagtcattaactgatcccacttttca |
10755427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 249
Target Start/End: Complemental strand, 18356140 - 18356080
Alignment:
| Q |
189 |
tacaaccttactgtcttgatcaccacatgtcaaataagtccttaattgaacccatttttca |
249 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||| ||| |||||| |||| |||||| |
|
|
| T |
18356140 |
tacaaccttactgccttgagcaccacacatcaaataaggcctcaattgatcccacttttca |
18356080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University