View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_high_34 (Length: 253)
Name: NF6157_high_34
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_high_34 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 21265066 - 21264823
Alignment:
| Q |
1 |
aatgtacctgcgctacgacatacggtaactgtttattttcagctcaaatagtcctacaataattttatcacttactattctcattttggactctcgtaag |
100 |
Q |
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| T |
21265066 |
aatgtaccttcgctacgacatacagtaactgtttattttcagctcaaatagtcctacaataattttatcacttgctattctcattttggactctcataag |
21264967 |
T |
|
| Q |
101 |
atcaaggcatgatttcccttgtagcttgcgtgaaaagaaggctttgtagtaatcttccactgcaagtgttttgaacaatgcaggcctttcaagagtaaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
21264966 |
atcaaggcatgatttcccttgtagcttgcgtgaaaagaatgctttgtagtaatcttccactgtaagtgttttgaacaatgcaggcctttcaagagtaaca |
21264867 |
T |
|
| Q |
201 |
agactttgtgttggacctataactttgctcatttgaggtctgtg |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21264866 |
agactttgtgttggacctataactttgctcatttgaggtctgtg |
21264823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 77 - 244
Target Start/End: Complemental strand, 22929591 - 22929424
Alignment:
| Q |
77 |
attctcattttggactctcgtaagatcaaggcatgatttcccttgtagcttgcgtgaaaagaaggctttgtagtaatcttccactgcaagtgttttgaac |
176 |
Q |
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|||||||||||||| |||| ||| |||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||| | |||| ||||||| |
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| T |
22929591 |
attctcattttggattctcataatatcaaggcatgactttccttgtagcttacgtgaaaagaatgctttgtagtaatcttccacagtaagttttttgaat |
22929492 |
T |
|
| Q |
177 |
aatgcaggcctttcaagagtaacaagactttgtgttggacctataactttgctcatttgaggtctgtg |
244 |
Q |
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| T |
22929491 |
aatgcaggcctttcaggagtaacaagtgttggtgttggacctataactttgcttatttgaggtctgtg |
22929424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 244
Target Start/End: Original strand, 23021424 - 23021620
Alignment:
| Q |
48 |
atagtcctacaataattttatcacttactattctcattttggactctcgtaagatcaaggcatgatttcccttgtagcttgcgtgaaaagaaggctttgt |
147 |
Q |
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||||||||| ||| ||||||||||| ||||| || ||||| | |||| |||||||||| ||||||||||| ||||||| ||||||||| | |||||| |
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| T |
23021424 |
atagtcctatgatacttttatcacttcctattatctttttgaattctcataagatcaagacatgatttcccctgtagctggcgtgaaaatattactttgt |
23021523 |
T |
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| Q |
148 |
agtaatcttccactgcaagtgttttgaacaatgcaggcctttcaagagtaacaagactttgtgttggacctataactttgctcatttgaggtctgtg |
244 |
Q |
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| T |
23021524 |
agtaatcttcaacggtaagtgttttgaacaatgcaggtctttcaggggtaacaagtcttggtgttggacctataacggtgctcatttgaggtctgtg |
23021620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 22981423 - 22981492
Alignment:
| Q |
167 |
tgttttgaacaatgcaggcctttcaagagtaacaagactttgtgttggacctataactttgctcatttga |
236 |
Q |
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| T |
22981423 |
tgttttgaacaatgcaggtctttcagctgtaataaggcttggtgttggacctataacactgctcatttga |
22981492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 63 - 244
Target Start/End: Original strand, 22340 - 22521
Alignment:
| Q |
63 |
ttttatcacttactattctcattttggactctcgtaagatcaaggcatgatttcccttgtagcttgcgtgaaaagaaggctttgtagtaatcttccactg |
162 |
Q |
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|||| ||||||||||||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |
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| T |
22340 |
ttttgtcacttactattctcgttttggattctcataagatcaatgcatgatttcccttgtagcttgcgtgaaaagaatgctttgtagtaatcttctacag |
22439 |
T |
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| Q |
163 |
caagtgttttgaacaatgcaggcctttcaagagtaacaagactttgtgttggacctataactttgctcatttgaggtctgtg |
244 |
Q |
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|| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
22440 |
taattgttttgaacaatgcaggcctttcaggagtaacaagtttttgtgttggacctataactttgctcatctgaggtctgtg |
22521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 10003 - 9891
Alignment:
| Q |
109 |
atgatttcccttgtagcttgcgtgaaaagaaggctttgtagtaatcttccactgcaagtgttttgaacaatgcaggcctttcaagagtaacaagactttg |
208 |
Q |
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||||||||||||||| ||||| ||||| | ||||| |||||||| | | |||| |||||||||||||||||| |||||| |||| ||||| || | |
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| T |
10003 |
atgatttcccttgtatcttgcttgaaaggtgtgctttcaagtaatctgcagcagcaattgttttgaacaatgcaggactttcaggagtcacaaggctggg |
9904 |
T |
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| Q |
209 |
tgttggacctata |
221 |
Q |
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|||||| |||||| |
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| T |
9903 |
tgttgggcctata |
9891 |
T |
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