View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6157_high_44 (Length: 232)
Name: NF6157_high_44
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_high_44 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 7160664 - 7160863
Alignment:
| Q |
16 |
atatcatgttgttctttaactaaggtgtgtgaatcaatcggaaaattgaagcatttaagatatcttaatttgtggcgttgcagagatttgggaagcattt |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
7160664 |
atatcatgttgttctttaagtaaggtgtgtgaatcaatcggaaaattgaagcatttaagatatcttaacttatggcgttgcagagatttgggaagcattt |
7160763 |
T |
|
| Q |
116 |
ctaaatccataagtaattttatttgcctacaaacactaatattgaggcagtgtaacgaagttaagttctatgcaaaaggtgggtcaaaattaattaattt |
215 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7160764 |
ctaaatccgtaggtaattttgtttgcctacaaacactaatattgaggcagtgtaacgaagttaagttctatgcaaaaggtgggtcaaaattaattaattt |
7160863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 3169152 - 3169022
Alignment:
| Q |
24 |
ttgttctttaactaaggtgtgtgaatcaatcggaaaattgaagcatttaagatatcttaatttgtggcgttgcagagatttgggaagcatttctaaatcc |
123 |
Q |
| |
|
|||||||||| |||| ||||||| ||||| | ||||||||||||||||||||||||| | || ||| ||||||| ||||||| ||| ||||||| |
|
|
| T |
3169152 |
ttgttctttatgtaagttgtgtgattcaattgtaaaattgaagcatttaagatatcttgacttatggtactgcagaggagtgggaagtgtttttaaatcc |
3169053 |
T |
|
| Q |
124 |
ataagtaattttatttgcctacaaacactaa |
154 |
Q |
| |
|
|||| |||| | ||||| |||||||||||| |
|
|
| T |
3169052 |
ataactaatatggtttgcttacaaacactaa |
3169022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 3172705 - 3172662
Alignment:
| Q |
43 |
tgtgaatcaatcggaaaattgaagcatttaagatatcttaattt |
86 |
Q |
| |
|
||||| ||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
3172705 |
tgtgattcaattggaaaattgaggcatttaagatatcttaattt |
3172662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 3281394 - 3281330
Alignment:
| Q |
19 |
tcatgttgttctttaactaaggtgtgtgaatcaatcggaaaattgaagcatttaagatatcttaa |
83 |
Q |
| |
|
|||| ||||||||||| ||| ||| | | ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
3281394 |
tcatattgttctttaagcaagttgtctaattcaattggaaaattgaaacatttaagatatcttaa |
3281330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University