View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_high_6 (Length: 443)
Name: NF6157_high_6
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 22 - 427
Target Start/End: Complemental strand, 24183861 - 24183457
Alignment:
| Q |
22 |
aacatcaaagaaaaccaatcctaaaccaatgcaccagatttccactttagatagaacaaacctgcaaaacatcagagaaaaccaccccaaaaagaaaatt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
24183861 |
aacatcaaagaaaaccaatcctaaaccaatgcaccagatttccactttagatagaacaaacctacaaaacatcagagaaaaccaccccaaaaataaaatt |
24183762 |
T |
|
| Q |
122 |
gactagatcaatgaagtaaaagaaaccaaccaatcaaaaccctaattacgagcattaagaatccttccaatctcaaatgaaacaaaagcatcaatacatg |
221 |
Q |
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|||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24183761 |
aactagatcaatgaagtaagagaaaccaaccaatcaaa-ccctagttacgagcattaagaatccttccaatctcaaatgaaacaaaagcatcaatacatg |
24183663 |
T |
|
| Q |
222 |
catactgaacttgctgaggagtaagcctaaaactattccacctgctcatagtaatcttccttggtttctcaagatccttcccaggaacacttaaagccaa |
321 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24183662 |
catactgaacttgctgaggagtaagcctaaaactattccacctgctcatagtaatcttccttggtttctcaagatccttcccaagaacacttaaagccaa |
24183563 |
T |
|
| Q |
322 |
tgctttgagtccaccacgtctcatatgttccccaaatctctcagcagcaaggttgcgaagttcaacaaagttagcaacaaccaaagagtagtctctaaga |
421 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24183562 |
tgctttgagtccaccacatctcatatgttccccaaatctctcagcagcaaggttgcgaagttcaacaaagttagcaacaaccaaagagtagtctctaaga |
24183463 |
T |
|
| Q |
422 |
agctta |
427 |
Q |
| |
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|||||| |
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| T |
24183462 |
agctta |
24183457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 105
Target Start/End: Complemental strand, 24183904 - 24183845
Alignment:
| Q |
46 |
accaatgcaccagatttccactttagatagaacaaacctgcaaaacatcagagaaaacca |
105 |
Q |
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|||||||||||||||||||| | |||| || |||||||| || ||||||| ||||||||| |
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| T |
24183904 |
accaatgcaccagatttccattctagacagcacaaacctacagaacatcaaagaaaacca |
24183845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 51947378 - 51947320
Alignment:
| Q |
178 |
aagaatccttccaatctcaaatgaaacaaaagcatcaatacatgcatactgaacttgct |
236 |
Q |
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||||| |||||||| |||||| || | ||||||||||| ||||||||| |||||||||| |
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| T |
51947378 |
aagaagccttccaacctcaaacgagataaaagcatcaacacatgcatattgaacttgct |
51947320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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