View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_low_13 (Length: 405)
Name: NF6157_low_13
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 5e-66; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 5159476 - 5159249
Alignment:
| Q |
1 |
agatataattttcaataaataaagctgtaagaaatattccccnnnnnnn-tgtacaacttatgtttgactatttaaaaaatttcaagnnnnnnnngagtg |
99 |
Q |
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| T |
5159476 |
agatataattt-caataaataaatctgtaagaactattccccaaaaaaaatttacaaattatgtttgactatttaaaaaatttcaagttttttttgagtg |
5159378 |
T |
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| Q |
100 |
catatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattgaagt |
199 |
Q |
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| T |
5159377 |
catatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgataaagatggcatttactcattgaagt |
5159278 |
T |
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| Q |
200 |
cggcatactatcgcgtcaaagaggaaatg |
228 |
Q |
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|||| |||||||||||||||| ||||| |
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| T |
5159277 |
tggcaacctatcgcgtcaaagagaaaatg |
5159249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 5181608 - 5181476
Alignment:
| Q |
97 |
gtgcatatgacaaaacaagaagatgaagtctcaaattcttggagaatcctagatgacaaattggtatgggaatatgattaagatgtcatttactcattga |
196 |
Q |
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| T |
5181608 |
gtgcatatgacaaaacaagaagatgaaatctcaaattcttggagaatcctagatgagaaattggtatgggaatatgataaagatggcatttactcattga |
5181509 |
T |
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| Q |
197 |
agtcggcatactatcgcgtcaaagaggaaatgg |
229 |
Q |
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| T |
5181508 |
agtcggcaacctatcgcgtcaaagaggaaatgg |
5181476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 5194882 - 5194831
Alignment:
| Q |
178 |
gatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
229 |
Q |
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| T |
5194882 |
gatggcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatgg |
5194831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 167 - 228
Target Start/End: Original strand, 4843278 - 4843339
Alignment:
| Q |
167 |
aatatgattaagatgtcatttactcattgaagtcggcatactatcgcgtcaaagaggaaatg |
228 |
Q |
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| T |
4843278 |
aatatgataaagatggcatttactcattgaagtcggcaaactatcgcgtcaaagagaaaatg |
4843339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 163
Target Start/End: Complemental strand, 5172374 - 5172339
Alignment:
| Q |
128 |
caaattcttggagaatcctagatgacaaattggtat |
163 |
Q |
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| T |
5172374 |
caaattcttggagaatccttgatgacaaattggtat |
5172339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 4843423 - 4843461
Alignment:
| Q |
230 |
aaagagtattatgtggagagtgacaaaacatattttttc |
268 |
Q |
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|
| T |
4843423 |
aaagagtattatgtggagagtggcaaaccatattttttc |
4843461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 5172136 - 5172102
Alignment:
| Q |
230 |
aaagagtattatgtggagagtgacaaaacatattt |
264 |
Q |
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| T |
5172136 |
aaagagtattatgtggagagtggcaaaacatattt |
5172102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 5195106 - 5195065
Alignment:
| Q |
1 |
agatataattttcaataaataaagctgtaagaaatattcccc |
42 |
Q |
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||||||||||||||||||||||| | ||||||| |||||||| |
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| T |
5195106 |
agatataattttcaataaataaatcggtaagaactattcccc |
5195065 |
T |
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