View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6157_low_14 (Length: 396)
Name: NF6157_low_14
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_14 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 11 - 396
Target Start/End: Original strand, 47543847 - 47544232
Alignment:
| Q |
11 |
cacagacatctgatccttatgaacttggacttcagcctactgtaaaaggtttgaattgttaaacacatttgtatgcaattatgaagtttaacatagaaaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47543847 |
cacagacatctgatccttatgaacttggacttcatcctactgcaaaaggtttgaattgttaaacacatttgtatgcaattatgaagtttaacatagaaaa |
47543946 |
T |
|
| Q |
111 |
catttgcatgggaaatttataaaagttatccgtcttttgtattttatttatctgtagagtgtggccctgctggagctccttccatgccacagaaacctgt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47543947 |
catttgcatgggaaatttataaaagttatccgtcttttgtattttatttatctgtagagtgtggccctgctggagctccttccatgccacagaaacctgt |
47544046 |
T |
|
| Q |
211 |
tgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaataacccttccgatgca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47544047 |
tgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatagagacaataacccttccgatgca |
47544146 |
T |
|
| Q |
311 |
aaacgacttaagaggtaacaatattctaggagttcaatatgtttcacatacgacatgataaacacttgtgttataagtgtgtgttt |
396 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47544147 |
aaacgacttaagaggtaacaatattctaggagttcaatatgtttcacatacgacatgataaacacttgtgttataagtgtgtgttt |
47544232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 294
Target Start/End: Original strand, 47527660 - 47527761
Alignment:
| Q |
187 |
tccttccatgccacagaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaat |
286 |
Q |
| |
|
||||| ||||||| ||||||| | ||||||| |||| |||||| ||||||||||| |||||||| ||| ||| |||| |||||| ||||||||||| |
|
|
| T |
47527660 |
tccttgcatgccaaagaaaccagctgttaca---atcaagtcaacaacaagtggatcatcagacgatgaggaaggtgat---ggagagattaatatgaat |
47527753 |
T |
|
| Q |
287 |
ggagacaa |
294 |
Q |
| |
|
|||||||| |
|
|
| T |
47527754 |
ggagacaa |
47527761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 148
Target Start/End: Complemental strand, 10266952 - 10266914
Alignment:
| Q |
110 |
acatttgcatgggaaatttataaaagttatccgtctttt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10266952 |
acatttgcatgggaaatttataaaagttatccgtatttt |
10266914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 10281776 - 10281736
Alignment:
| Q |
333 |
attctaggagttcaatatgtttcacatacgacatgataaac |
373 |
Q |
| |
|
|||||||||||||||| |||||| |||| |||||||||||| |
|
|
| T |
10281776 |
attctaggagttcaatgtgtttctcataggacatgataaac |
10281736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 202 - 314
Target Start/End: Original strand, 101322 - 101431
Alignment:
| Q |
202 |
gaaacctgttgttacagcaatcaggtcaacgacaagtggatcctcagacgaagagaaagctgatcagggagaggttaatatgaatggagacaataaccct |
301 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||||| |||||| | ||| |||| |||||| ||||||||||||||||||| ||| || |
|
|
| T |
101322 |
gaaacctgttgttacaac---caggtcaacgacaagtggatcctcaggcgaagatgaggcttatcaaggagagattaatatgaatggagacaagaacgct |
101418 |
T |
|
| Q |
302 |
tccgatgcaaaac |
314 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
101419 |
tctgatgcaaaac |
101431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 364
Target Start/End: Original strand, 101435 - 101466
Alignment:
| Q |
333 |
attctaggagttcaatatgtttcacatacgac |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
101435 |
attctaggagttcaatatgtttcacatacgac |
101466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University