View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_low_16 (Length: 380)
Name: NF6157_low_16
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 27228932 - 27228566
Alignment:
| Q |
1 |
gaagaatagttcaaaagtttggtgagatggctaatagagatgtaacgttacacttttttaaagatatatgttaaggaactcataaaaatatgtcttaaaa |
100 |
Q |
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| T |
27228932 |
gaagaatagttcaaaagtttggtgagatggctaatagagatgtaacgttacactttcttaaagatatatgttaaggaactcataaaaatatgtcttaaaa |
27228833 |
T |
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| Q |
101 |
tagttgcgcactcaactattttaaaattaaaatattataattttctatgcaaagtagctacttttgaatttcttagtatttctctttttgaaacaaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27228832 |
tagttgcgcactcaactattttaaaattaaaatattataattttctatgcaaagtagctacttttgaatttcttagtatttctctttttgaaacaaatta |
27228733 |
T |
|
| Q |
201 |
gcaagaccgaccttttaagatataatacnnnnnnnnnnnnnnnnnnncggtttagattctttccattaaaaattctctccatttttctctaagtaaaata |
300 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27228732 |
gcaagaccgacctttcaagatataatacaaaaaagaaaaaattaaaacggtttagattctttccattaaaaattctctccatttttctctaagtaaaata |
27228633 |
T |
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| Q |
301 |
tcaactattaaacatgagacagaatgtaaaagttaaatcataaaagaaaagtggtttgtgtaattta |
367 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27228632 |
tcaactattaaacatgagacagaatgtaaaagttaaatcataaaagaaaagtggtttgtgtaattta |
27228566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 27268680 - 27268485
Alignment:
| Q |
1 |
gaagaatagttcaaaagtttggtgagatggctaatagagatgtaacgttacacttttttaaagatatatgttaaggaactcataaaaatatgtcttaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27268680 |
gaagaatagttcaaaagtttggtgagatggctaatagaaatgtaacgtcacactttcttaaagatatatgttaaggaactcataaaaatatgtcttaaaa |
27268581 |
T |
|
| Q |
101 |
tagttgcgcactcaactattttaaaattaaaatattataattttctatgcaaagtagctacttttgaatttcttagtatttctctttttgaaacaaa |
197 |
Q |
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|||| | ||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
27268580 |
tagtcacacactcaactatttaaaagttaaaatattataattttctat-caaagtagctacttttgaatttcttaatatttctctttttgacacaaa |
27268485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 248 - 367
Target Start/End: Complemental strand, 27268442 - 27268322
Alignment:
| Q |
248 |
cggtttagattctttccattaaaaattctctccatttttctct-aagtaaaatatcaactattaaacatgagacagaatgtaaaagttaaatcataaaag |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27268442 |
cggtttagattctttccattaaaaattctctccatttttctcttaagtaaaatatcaactattaaacatgagacagaatgtaaaagttaaatcataaaag |
27268343 |
T |
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| Q |
347 |
aaaagtggtttgtgtaattta |
367 |
Q |
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||||||||||||||||||||| |
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| T |
27268342 |
aaaagtggtttgtgtaattta |
27268322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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