View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6157_low_19 (Length: 365)

Name: NF6157_low_19
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6157_low_19
NF6157_low_19
[»] chr1 (10 HSPs)
chr1 (18-355)||(48585459-48585796)
chr1 (18-355)||(48640032-48640369)
chr1 (42-175)||(48661708-48661841)
chr1 (62-175)||(48618046-48618159)
chr1 (26-177)||(48667287-48667438)
chr1 (18-175)||(48628998-48629155)
chr1 (51-175)||(48653285-48653409)
chr1 (51-173)||(11547396-11547518)
chr1 (249-324)||(48653483-48653558)
chr1 (248-310)||(48661896-48661958)
[»] chr3 (1 HSPs)
chr3 (249-347)||(19665230-19665328)


Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 48585459 - 48585796
Alignment:
Q  18 atagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  48585459 atagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggaaaaaaataattg 48585558  T
Q  118 tttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585559 tttatgatacatgaaaatggtttgtttaaatcagcatgattcttgatcatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaa 48585658  T
Q  218 gagctctgaaggctgaacgatcaccgtctggtaaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48585659 gagctctgaaggctgaacgatcaccgtctggtaaaccatcatcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgat 48585758  T
Q  318 gttgttagcagctcgcatgtttttgccagccgtctctg 355  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48585759 gttgttagcagctcgcatgtttttgccagccgtctctg 48585796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 48640032 - 48640369
Alignment:
Q  18 atagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattg 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||       || |||    
T  48640032 atagtaagtggtgaaaacagcagcggaattagtccatgacaaaacagaaggaatattgtgttcattagcaacgtcacaaacccatggaaaaaaatagttg 48640131  T
Q  118 tttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaatagagggtctaccagcaacctcaatttcagcggagtgctgaa 217  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| || ||||| |||||| || |||| ||||||||||||||||||||  |||||||||    
T  48640132 tttatgatacatgaaaatggtttgtttgaatcggcatgattctttatcatttgtgaaataaagtgtctgccagcaacctcaatttcagcatagtgctgaa 48640231  T
Q  218 gagctctgaaggctgaacgatcaccgtctggtaaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgat 317  Q
    ||||||||||||| |||| |   || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48640232 gagctctgaaggccgaaccactgccatctggtaaaccatcgtcaaagaactcgaaagcgaaagtaccatcaccaattggagttgctaatttgtcaatgat 48640331  T
Q  318 gttgttagcagctcgcatgtttttgccagccgtctctg 355  Q
    ||||||||||||||||||||||||||||||||||||||    
T  48640332 gttgttagcagctcgcatgtttttgccagccgtctctg 48640369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 42 - 175
Target Start/End: Original strand, 48661708 - 48661841
Alignment:
Q  42 ggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttg 141  Q
    ||||||||||||| ||||| ||||||||||||||||||||  ||| | |||||||||||||||         ||||||||||| |||||||| |||||||    
T  48661708 ggaattagtccataataaagcagaaggaatattgtgttcaaaagctatatcacaaacccatggaagaaatggattgtttatgacacatgaaattggtttg 48661807  T
Q  142 tttaaatcagcatgattcttgataatttgagaaa 175  Q
    ||| ||||||||||||||||||| ||||||||||    
T  48661808 tttgaatcagcatgattcttgatcatttgagaaa 48661841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 48618159 - 48618046
Alignment:
Q  62 cagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatcagcatgattctt 161  Q
    |||||||||||   ||||||| ||| |||||||||||||||||         ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  48618159 cagaaggaataccatgttcatcagctacatcacaaacccatggaacaaaaggattgtttatgatacatgaaaatggtttgtttgaatcagcatgattctt 48618060  T
Q  162 gataatttgagaaa 175  Q
    ||| ||||||||||    
T  48618059 gatcatttgagaaa 48618046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 48667287 - 48667438
Alignment:
Q  26 tggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgat 125  Q
    ||||||||||||||   |||||||||||| | ||| ||||||||||||||||||||  ||| | ||||| |||||||||          |||||||| ||    
T  48667287 tggtgaaaacagcactagaattagtccataacaaagcagaaggaatattgtgttcaaaagctatatcactaacccatggaaaaaaagggttgtttataat 48667386  T
Q  126 acatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaata 177  Q
    |||||||| |||||||||  |||||||||||||||| || ||||||||||||    
T  48667387 acatgaaattggtttgttcgaatcagcatgattctttatcatttgagaaata 48667438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 48628998 - 48629155
Alignment:
Q  18 atagtaagtggtgaaaacagcagcggaattagtccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattg 117  Q
    ||||||||||| ||||||||||   |||||| ||||||||||| |||||||||| |  ||||||  ||| ||||| |||||||||||         ||||    
T  48628998 atagtaagtggcgaaaacagcactagaattattccatgataaagcagaaggaatgtcatgttcaaaagctacatcgcaaacccatggaagaaaaggattg 48629097  T
Q  118 tttatgatacatgaaaatggtttgtttaaatcagcatgattcttgataatttgagaaa 175  Q
    | |||||||||||||| ||||||  || ||||||||||||||||||| |||| |||||    
T  48629098 tatatgatacatgaaattggtttacttgaatcagcatgattcttgatcattttagaaa 48629155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 48653285 - 48653409
Alignment:
Q  51 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 150  Q
    |||| |||||||||||||||||   ||||||| ||| |||||||||||||| ||         ||| ||||||| |||||||| |||||||||| | |||    
T  48653285 ccataataaaacagaaggaataccatgttcatcagctacatcacaaacccaaggaagaaagggattatttatgagacatgaaattggtttgtttgactca 48653384  T
Q  151 gcatgattcttgataatttgagaaa 175  Q
    |||||||||||||| ||||||||||    
T  48653385 gcatgattcttgatcatttgagaaa 48653409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 173
Target Start/End: Original strand, 11547396 - 11547518
Alignment:
Q  51 ccatgataaaacagaaggaatattgtgttcattagcaacatcacaaacccatggnnnnnnntaattgtttatgatacatgaaaatggtttgtttaaatca 150  Q
    |||| |||||||||||||||||   ||||||| ||| |||||||||||||| ||         ||||||||||||||| |||| |||||||||| | |||    
T  11547396 ccataataaaacagaaggaataccatgttcatgagctacatcacaaacccaaggaacaaaaggattgtttatgatacaagaaattggtttgtttgactca 11547495  T
Q  151 gcatgattcttgataatttgaga 173  Q
     ||||||||||||| ||||||||    
T  11547496 acatgattcttgatcatttgaga 11547518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 249 - 324
Target Start/End: Original strand, 48653483 - 48653558
Alignment:
Q  249 taaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgtta 324  Q
    ||||| ||||||||||||||| |||| ||  | ||||||||||||||||||   | |||| |||||||||||||||    
T  48653483 taaacaatcatcaaagaactcaaaagtgagtgaaccatcaccaattggagtgaatgatttttcaatgatgttgtta 48653558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 48661896 - 48661958
Alignment:
Q  248 gtaaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgt 310  Q
    |||||| || ||||||||||||||||  || || ||||||||| || ||||||||||||||||    
T  48661896 gtaaactatgatcaaagaactcgaaaatgagagaaccatcacctatcggagttgctaatttgt 48661958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 347
Target Start/End: Complemental strand, 19665328 - 19665230
Alignment:
Q  249 taaaccatcatcaaagaactcgaaagagaaagtaccatcaccaattggagttgctaatttgtcaatgatgttgttagcagctcgcatgtttttgccagc 347  Q
    |||||||||||||||||| | ||||  || || ||||||||| ||||||||   | |||||| | ||||||||||| ||| | |||||| |||||||||    
T  19665328 taaaccatcatcaaagaagtggaaaatgagagaaccatcacctattggagtgagtgatttgtgagtgatgttgttaacagtttgcatgtctttgccagc 19665230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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