View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_low_23 (Length: 348)
Name: NF6157_low_23
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 47 - 336
Target Start/End: Complemental strand, 34358724 - 34358436
Alignment:
| Q |
47 |
gtagcatgcaattcggcgatgaatctccannnnnnnngctgcttgcatggcacagctcataggaaaaacgccaatggtttacctgaagagtatcactaag |
146 |
Q |
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| T |
34358724 |
gtagcatgcaattcggtgatgaatctccattttttttgctgcttgcatggcacaactcataggaaaaacgccaatggtttacctgaagagtatcactaag |
34358625 |
T |
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| Q |
147 |
ggctcagttgctaacattgctgcaaagcttgaggttatggagccttgttgtagtgtcaaagacaggtagatgtgtgtgtatgacaacattaatcgttctc |
246 |
Q |
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| T |
34358624 |
ggctcagttgctaacattgctgcaaagcttgaggttatggagccttgttgtagtgtcaaagacaggtagatgtgtgtgtatgacaacattaatcgttctc |
34358525 |
T |
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| Q |
247 |
ttcttcctttttaaacattttggttcctttatcttgtannnnnnnnnnngtttcctttctatatttgtgggtcagtcaacgggtgatatt |
336 |
Q |
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| T |
34358524 |
ttcttcctttttaaacattttggttccattatcttgca-ttttttttttgtttcctttctatatttgttggtcagtcaacgggtgatatt |
34358436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 92 - 282
Target Start/End: Complemental strand, 34353040 - 34352854
Alignment:
| Q |
92 |
catggcacagctcataggaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaacattgctgcaaagcttgaggttatggagcct |
191 |
Q |
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| T |
34353040 |
catggtacagctcataggaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaatattgctgctaagcttgagcttatggagcca |
34352941 |
T |
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| Q |
192 |
tgttgtagtgtcaaagacaggtagatgtgtgtgtatgacaacattaatcgttctcttcttcctttttaaacattttggttcctttatcttg |
282 |
Q |
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| T |
34352940 |
tgttgtagtgtcaaagacaggtag----gtgtgtgtgacagcattagttgttctcttcttcctttttaaacattttggtttctttatcttg |
34352854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 34369126 - 34369011
Alignment:
| Q |
99 |
cagctcataggaaaaacgccaatggtttacctgaagagtatcactaagggctcagttgctaacattgctgcaaagcttgaggttatggagccttgttgta |
198 |
Q |
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| T |
34369126 |
cagctcataggaaaaacaccaatggtttatctgaatagcatcgcaaagggttccgttgctaatattgctgctaagcttgagattatggagccttgttgta |
34369027 |
T |
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| Q |
199 |
gtgtcaaagacaggta |
214 |
Q |
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| T |
34369026 |
gtgtcaaagacaggta |
34369011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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