View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_low_29 (Length: 303)
Name: NF6157_low_29
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 130 - 286
Target Start/End: Original strand, 38323820 - 38323976
Alignment:
| Q |
130 |
acaaaccttgtgtctttgcaagtttaaatgttgaagtgaattgaatactggagattgcttgcattattgcagatggaaattgaaccgaattggtggaggt |
229 |
Q |
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| T |
38323820 |
acaaaccttgtgtctttgcaagtttaaatgttgaagtgaattgaatactggagattgcttgcattattgcagatggaaattgaaccgaattggtggaggt |
38323919 |
T |
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| Q |
230 |
aaataattgtttaatcttacagtgtgtatgcttgctgactttcctagtagagtttaa |
286 |
Q |
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| T |
38323920 |
aaataattgtttaatcttacagtgtgtatgcttgctgactttcctagtagagtttaa |
38323976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 38323772 - 38323823
Alignment:
| Q |
6 |
agtgaaaagaaagttattggcaaacacttcgcaagtaaaaaatgggaaacaa |
57 |
Q |
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| T |
38323772 |
agtgaaaagaaagttattgacaaacactttgcaagtaaaaaatgggaaacaa |
38323823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 266
Target Start/End: Original strand, 38330978 - 38331101
Alignment:
| Q |
143 |
ctttgcaagtttaaatgttgaagtgaattgaatactggagattgcttgcattattgcagatggaaattgaaccgaattggtggaggtaaataattgttta |
242 |
Q |
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| T |
38330978 |
ctttgcaggtttgaatattgaattggatagaattctggagattgcttgtataattacagatggaaacttaaccaaatcagtggaggtatataattatttg |
38331077 |
T |
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| Q |
243 |
atcttacagtgtgtatgcttgctg |
266 |
Q |
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| T |
38331078 |
atgttacattttgcatgcttgctg |
38331101 |
T |
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