View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_low_34 (Length: 261)
Name: NF6157_low_34
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 39777147 - 39777395
Alignment:
| Q |
1 |
aaaaatcaacctttattccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttactttgt |
100 |
Q |
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| T |
39777147 |
aaaaatcaacctttattccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttagtttgt |
39777246 |
T |
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| Q |
101 |
gccactagcatcatatatatactctatattaaagagagaagatggaacatatagaaaagaagctcatcatgctttctattaagctctcatcttttctatc |
200 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39777247 |
gccactagcatcatatatatactct-tataaaagagagaagagggaacatatagaaaagaagctcatcatgctttctattaagctctcatcttttctatc |
39777345 |
T |
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| Q |
201 |
gttcttctaccataattttgggcattgttagtgaagctccatcgtgttca |
250 |
Q |
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| T |
39777346 |
gttcttctaccataattttgggcattgttattgaagctccatcgtgttca |
39777395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 32743946 - 32743840
Alignment:
| Q |
17 |
tccatcagttttcattgccataaatatcctttatattgctaagaaatcttgcaacggaaagatagggccattcatttactttgtgccactagcatcatat |
116 |
Q |
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||||| ||||||||||||||| ||||| ||||| |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| | ||| || |
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| T |
32743946 |
tccattagttttcattgccattaatattttttatgttgctaagaaatgttgcaacggaaagatagagccattcattttgtttgtgccactgacgtcacat |
32743847 |
T |
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| Q |
117 |
atatact |
123 |
Q |
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||||||| |
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| T |
32743846 |
atatact |
32743840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 248
Target Start/End: Complemental strand, 32743791 - 32743707
Alignment:
| Q |
161 |
agctcatcatgctttctattaagctctcatcttttctatcgttcttctaccataattttgggcattgttagtgaagctccatcgtgtt |
248 |
Q |
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|||| ||||||||||||||||||||||| |||| | | | |||||| | |||||||||| |||||| |||||||||||||||||| |
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| T |
32743791 |
agctgatcatgctttctattaagctctcttcttctttcttgttctttga---taattttgggtattgtttgtgaagctccatcgtgtt |
32743707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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