View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6157_low_41 (Length: 244)
Name: NF6157_low_41
Description: NF6157
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6157_low_41 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 244
Target Start/End: Complemental strand, 21658391 - 21658166
Alignment:
| Q |
19 |
ataatataaatattttaattaatcaaattattatatcttaggtatatccccagtaaattatcaaagggaggtgatcactgagtatgatgagttatctcat |
118 |
Q |
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| T |
21658391 |
ataatataaatattttaattaatcaaattattatatcttaggtatagccccagtaaattatcaaagggaggtgatcactgagtatgatgagttatctcat |
21658292 |
T |
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| Q |
119 |
acaattgggctccaagtggttgaaggaggctatctgaatcaagggttgtcatactacaagacaacttttcaattctcagcaatatcagagaataaaactt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
21658291 |
acaattgggctccaagtggttgaaggaggctatctgaatcaaggcttgtcatactacaagacaactttccaattctcagcaatatcagagaataaaactt |
21658192 |
T |
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| Q |
219 |
tggtgaatgtgaagatctcttatgat |
244 |
Q |
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|||||||||||||||||||||||||| |
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| T |
21658191 |
tggtgaatgtgaagatctcttatgat |
21658166 |
T |
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